Coregonus clupeaformis (lake whitefish): 121571158
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Entry
121571158 CDS
T08357
Name
(RefSeq) tripartite motif-containing protein 16 isoform X1
KO
K28076
finTRIM family protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121571158
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121571158
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRIM_CC
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-RING_2
zf-RING_5
Fib_alpha
CLIP1
U-box
DUF3584
Motif
Other DBs
NCBI-GeneID:
121571158
NCBI-ProteinID:
XP_041738422
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Position
8
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AA seq
575 aa
AA seq
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MAEQGVLLDQGQFCCSICLDLLKEPVTINCGHSYCSNCIEDSWDKDDTTGVYSCPQCRQT
FSPRPALMKNSLLAMVVGNMKKTGLQPTPPALCFAGPGDVECDFCNGRKQKALKSCLVCL
ASYCETHLQPHYNVAPLMKHKLVKATTQLQDNICSHHDKLMEIFCRTDQQCICYLCTMDE
HKGHDTVSITAEKTEKQKQIGTSQQKVNQRVQEREKELKELQQAVESLSRSAQAAVEESE
RIFTELIDSIERRRSEMKELIVAQENSALSQAEALMERLEQEIAELKRREIELEKLTHTE
DHIHFLEVASLSDHPSVIAKGTHYSGSYQSLASPSVFSDLPTIDVCPLQYFEDVSEAVSN
LREKLEGILKREWCRISTRVNLVDVLHPPKPKTRADFLQYSCRLTLDPNTLYRQLFLSER
NRKVKLKRKGYSYPSRPDRFTQMCQVLCGEGLSGRCYWEVEWSGWKIYAGVSYKDISRSG
PADDCQFGHNDKSWSLECCSNGYFFRHNNVKTEVARPQSSRVGVYLDHQAGTLSFYSVSD
KMTLLHSVQTTFTQPLYPGFWLHCFKTTAELCELD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcagggagttctcctggaccagggccagttctgctgctctatctgcctggat
ttactgaaagagccggtcactatcaactgtggacacagttactgtagcaactgtattgag
gactcctgggataaggatgatacaacgggtgtctacagctgtccccagtgtagacagacc
ttctctccaaggcctgctctgatgaagaatagcctgctagccatggtggtcgggaacatg
aagaagacaggactccagcctactcctcctgctctgtgctttgctggacctggagatgtg
gaatgtgatttctgcaatgggagaaagcagaaagctctcaagtcatgtctggtgtgtcta
gcctcttactgcgagactcatctccagcctcactataatgtagctccgttgatgaagcac
aagctggtcaaagccaccacacaattgcaggacaatatctgctctcatcatgacaaactg
atggagattttctgccggaccgatcagcagtgtatctgttatctgtgtaccatggatgaa
cataaaggtcatgatacagtctcaatcacagcagaaaagactgagaaacagaagcagata
gggacgagtcagcagaaggtcaaccagagagtccaggagagggagaaagagttgaaggaa
ctgcaacaggctgtggagtctctcagccgctctgcacaggcagcagtggaagaaagtgag
aggatctttacagagttgattgactccattgagagaaggcgctctgagatgaaggagctg
atcgtagcccaggagaattcagctctaagtcaagctgaagccctcatggagcgtttggag
caggagatcgctgagctgaagagaagagagattgagctggagaagctgacacacacagag
gatcacatccatttcctggaggtagcttcactgagtgaccatccgtctgttattgcaaaa
ggaactcattattctgggagttatcagtctctcgccagtcccagtgtattttcagacttg
cccaccatcgatgtctgtcctcttcagtactttgaggatgtgagtgaggctgtgtctaac
cttagagagaaactggagggcatcttgaagagagaatggtgcagaatttccaccagagtg
aatctagtggatgttctacacccacccaagcccaagaccagagccgacttcttacaatat
tcatgtcggctcaccctggacccaaacacattatacagacaactctttctgtctgagcgg
aacagaaaggtgaaactgaagcgcaaaggctactcctaccccagccgtccagacagattc
actcaaatgtgtcaggtgctgtgcggggaaggtctgtctgggcgctgttactgggaggtg
gagtggagtgggtggaagatttatgcaggcgtttcgtataaagatatcagccgatctggg
cctgcggatgattgtcaatttggacacaatgacaagtcctggagtttagagtgctgtagt
aatggttactttttccgacataataatgtaaagactgaagtggcacgccctcagtcctcc
agagtaggagtgtacctggatcaccaggccggcactctgtccttctacagtgtctctgac
aaaatgaccctcctccacagtgtccagaccacattcactcagcccctctatcctgggttc
tggcttcattgctttaagaccacagctgagttatgtgagttagactag
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