Coregonus clupeaformis (lake whitefish): 121574111
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Entry
121574111 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121574111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121574111
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121574111
Spliceosome [BR:
cclu03041
]
Complex A
U2 snRNP components
U2 related factors
121574111
Complex B
121574111
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
121574111
NCBI-ProteinID:
XP_041742648
LinkDB
All DBs
Position
9:complement(55396324..55415335)
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AA seq
1063 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRREERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRSRRSRSRGRRSRSASPSKSRKTDEKSKSKEKDNPE
ASAEKKVKEEQEEDKVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREIE
EMKQGKKWSLEDDDDDDEEGPAPVDEPEEGEEGKGLEEKDIKEEEEEEEEEEEVTPMEQE
AEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVSVCKTKRGPNAHKKKGE
LMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPELA
KMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQITK
ECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRV
TYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPNELEQLWLSFKNQRQAE
GKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIENMFNS
KKRVKDLSAPGGGVGSPSAAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLGAE
AQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQAET
VKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYL
AIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtcaaggcattacaggaaacggtcggcttcaaggggtaggtctggtagt
cgatcaaagagccgttccccggacaaacgctccaagaaggatgatggggctgcctcacga
aaccgagacagggaccgcaacaggcgggaagagaggtctcgcagccgtgaccgccgccga
tcacggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcggtcc
agaagccgtgacaggagcagaaggtctaggagccgaggacgcagatcacgatccgccagc
cctagcaaaagcaggaaaactgatgagaagtccaaaagcaaggaaaaagacaaccctgaa
gcctctgcagagaagaaagtaaaagaagagcaagaggaggataaggttgaggatcaagac
tttgaccagaacaagctggaggaggagatgaggaagaggaaggagcgagtggagaagtgg
agggaggaccaaaggaagaaggcccttgggaacattgaggagatcaagagagagatagag
gagatgaagcagggaaagaagtggagtctggaggatgatgatgatgatgacgaggaaggc
ccagctcctgttgatgagcctgaagaaggagaggagggtaaggggttggaggagaaggat
ataaaggaggaggaggaggaggaagaagaagaggaggaagtgactcccatggagcaggag
gcagaggatgagctggataccttggacgcctacatggaggaggtcaaggaggaagtcaag
aagttcaacatgggcccccagtctaaagggaacgacaagaagggaggagtaaatgtatcc
aaagttgtcagcgtttgcaaaacaaagaggggaccgaatgcacacaaaaagaagggtgag
ctgatggagaatgaccaggatgcaatggaatactcgtccgaggaagaggaggtagatctg
gcaacagctctgactggctaccagaccaagcagaggaaggtgctggagccagtggaccac
cagaagattgagtacgaaccgtaccgcaaggacttctacgtagaggtgccagagctggcc
aagatgtctcctgaggaggtgaatgtccacaggctggacctggagggaatcgcagtcaaa
ggaaagggctgtcccaagcccatcaagtcatgggtgcagtgtggcacgtcgatgaagatc
ctaagtgcattaaagagacacagctatgagaaacccacacccatccaggcccaggccatc
ccagccatcatgtctgggagagacctcatcggcatcgctaagaccggcagtggaaagacc
atcgccttcctccttcccatgtaccgccacatcatggaccagaggcccctggaggaggct
gagggacccatcgctgtgatcatgactccaactagagagctggctctgcagatcaccaag
gagtgcaagaagttctccaagcccctgaacctgagggttgtgtgtgtgtatggaggcaca
gggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcacacca
ggccgaatgattgacatgttaggcgccaacagcggtcgagtcacaaacctgcgcagagtc
acgtacgtggtggtggacgaggcagatagaatgttcgacatgggctttgagccacaggtg
atgcgtatcatggacaacgtgcgtccggaccggcagacagtgatgttctcagccacgttc
ccgcgggccatggaggccctggccaggaggatcctgtccaaacccatcgaggtgcaggtg
ggaggcaggagtgtggtgtgctctgacgtggagcagcatgtgctggtaatcgaggaggac
cagaagttcctgaagctgctggagatactgggtcattaccaggagaagggttcagtcatc
atctttgtggacaaacaggagcacgctgacgggctgctaaaagatctgatgaaggcctcc
tacccctgcatgtctctgcacggcggtattgaccagtatgacagagacagcgtcatcaat
gactttaagaacggggcgtgtcggctgatggtggccacctctgtggcagccagggggctg
gacatcaagcagctgatcctggtcgtcaactacaactgtcccaaccactacgaggactac
gttcacagggccggacgcacagggagagccgggaacaaaggctttgcctataccttcatc
acagatgagcaggcgcgctacgctggggacatcatcaaggccctggagctctctgggtcc
cctgtgcccaatgaactggagcagttgtggctctccttcaaaaaccaacggcaagcggag
ggtaaaagcatcaagagcagcagcgggttctcagggaagggcttcaagtttgacgagacg
gagcatgctctggccaatgagaggaagaagctgcagaaggctgctctgggtctgcaggac
tccgatgatgaggatggagccctggatattgatgagcagatcgagaacatgttcaactcg
aagaagagggtgaaggatctgtcggctccagggggaggggtagggtcgcccagtgccgct
gcggctgcagcagggggcctggccaacctcggtgccccctctgctggaaacatccagaaa
ctggagatggccaagagactggctctcaggattaacgcccagaagaaccttggggctgag
gctcaggatgtgatgcaacaggccaccaacgccatcctgagaggaggcaccatcatggcc
ccctccgtctcagccaagaccatcgccgagcagctggctgagaagatcaacgccaagctc
aactacatccctgtggagaagctggaggaggagaggcaggcggccgagcaggccgagacc
gtcaagagatacgaagaggagctagaaatcaatgatttccctcagactgcaaggtggaag
gtcacgtctaaggaggccctccagaggatcggagagtactcggaggcagccatcaccatc
agaggaacatacttccctccaggcaaagagcccaaagagggagaacgcaagatctacctg
gccattgagagtgcaaatgagctggccgttacgaaggccaaggctgagatcacacggctc
atcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaaggaagatac
aaggttttgtaa
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