Coregonus clupeaformis (lake whitefish): 121579468
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Entry
121579468 CDS
T08357
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
cclu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121579468
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121579468
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121579468
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121579468
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579468
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121579468
Peptidases and inhibitors [BR:
cclu01002
]
Metallo peptidases
Family M67
121579468
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
121579468
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121579468
BRISC complex
121579468
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121579468
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121579468
BRITE hierarchy
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
121579468
NCBI-ProteinID:
XP_041750003
LinkDB
All DBs
Position
13:complement(41142370..41156088)
Genome browser
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRV
EISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFV
GLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAVEL
PKILCQEEQDTYRKIHSLTHLDLITKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNK
QNIIELQLEKERLTQELATM
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgagcgcagttcaccttgaatcagatgcctttttggtttgcatgaatcatgca
ttaagtaccgagaaggaggaagtaatgggactctgcatcggggaggtggacaccaaccgc
atcgtccacattcattctgttattattctccgacgctcagacaagaggaaggatcgcgtg
gaaatttcgcccgagcagctatcttcagcggctaccgaagctgagaggttggctgaaatg
actggacggccgatgcgtgtagttggttggtaccactctcacccccacatcactgtgtgg
ccatcacatgtggatgtgaggacacaggccatgtaccaaatgatggaccagggctttgtt
gggctgatattctcctgcttcattgaggataagaacacaaaaaccggtcgagttctctac
acctgcttccagtctgtccaagcccagaaaggctcagagtacgagagaatcgagatccca
attcatgtggttccacacgaggccattgggaaagtgtgccttgaatcagcagtggagctc
cccaaaatcctctgccaggaagagcaggacacctacagaaagattcacagcttaactcac
ctggatctgatcacgaagatacacaatggctcagtgttcactaagaacctgtgcagccag
atgtctgctgtgagtggtcccctgctgcagtggctggaggaccgtctggagcagaacaaa
cagaacatcattgagctgcagctggagaaagagagactaactcaggagctggcaaccatg
tga
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