Coregonus clupeaformis (lake whitefish): 121580771
Help
Entry
121580771 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121580771
03015 mRNA surveillance pathway
121580771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121580771
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121580771
5.6.2.5 RNA 5'-3' helicase
121580771
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121580771
mRNA cycle factors
Common to processing body (P body) and stress granule
121580771
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121580771
NCBI-ProteinID:
XP_041751730
LinkDB
All DBs
Position
14:12273808..12283523
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQANGP
DGVLQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSNTGRTSNMYFQTHDQIGMIGPGPMASMNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGGARGGRQRSRGMGNHGGGSVHQGL
MSGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacacggaggaa
gcggagttgcttggagcggatacccagggttcggagtatgagttcacggattttactctg
ccgagccagactcaaacaggccaaacgcagagtcagttggacaaccaggcgaatgggcct
gatggagttctgcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagatgaggaagacagctattatactaaagacctcccagttcatgca
tgcagttactgtggcattcacgatcctgcttgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacgtctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaggacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctcagagcaggagcagctccgggcccgccagatcaccgcccagcagata
aacaagctggaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctatgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atttgcctgaggtataagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggtgatgagatagccattgagctgaggagcagtgctggggct
cccgtggaagtaccacataacttccaggttgactttgtgtggaaatccacctcctttgac
cggatgcagagtgccctgaagacctttgccgtggatgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcttgcctgacctcaaccactcacaggtgtatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcactgggaaaactgtcacc
tccgccactgtagtgtatcacctggccagacagggcaacgggcctgtgctggtgtgcgct
cccagtaacattgcggtagaccagctgactgagaagatccacatgtcaggtctgaaagtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcatgaatgctgacgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctcaatcctcatcgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaaaaaggcagccaaggcaggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaagcccatgttcttctacgtgaccctgggccaggaggaaatcgcaagctctgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctg
aaggctggggccaagcctgaccagatagggatcatcaccccctacgagggccagcggtcc
tacctggtgcagtacatgcagtttagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccgcgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcattgtgggcaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagagagagcctcatgcagttcagcaagccccgcaagctagtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgccagagaggctctt
attcctggatctgtgtatgaccgcagcaacactggacgtacatccaacatgtacttccag
acccacgaccagatcggcatgattggcccgggccccatggcctccatgaacatccccatc
cccttcaacctggtcatgcctcccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggtggaggtatgaagggtaaggcaggcggcggaggggcgcgaggt
gggcgccagaggagccgtggcatggggaaccacggcgggggcagcgtgcatcagggcctc
atgagtggcagccaggccagccaggacctgggctcccagcccttctcccagggaccactc
acccagggctacatcaccatgagccagccctcccagatgagccagcctggcctctcccag
cctgaactctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggcc
ctctcccaagactccacctaccaaggggaaagagcctatcaacatggtgtgactggactg
tcccagtactag
DBGET
integrated database retrieval system
