Coregonus clupeaformis (lake whitefish): 121587475
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Entry
121587475 CDS
T08357
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121587475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121587475
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121587475
BRITE hierarchy
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
121587475
NCBI-ProteinID:
XP_041760370
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All DBs
Position
18:12780587..12823817
Genome browser
AA seq
1060 aa
AA seq
DB search
MATDIISPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKSVNRKTIDYN
PSVIRHLENRLWQRDHRDLRAIQPDAGCYNDLVPPVGIVSYPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCYEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKSGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNSLAAIPGMGIPDQFKAAMEQEASGKETASEEEMSIPGLDWGIEE
ILQKDLKKVPQKKVPYAKPIPAQFQQAWADNKVLLMPPGGEKKKMDEKTNTNPMMLEQMK
MDRLNPMDGNMPPPGGPQGPMPPFPGQGGPMPPPPQGFPQSMPPQQMPHIIGMMGPPDHH
GPQGMQRHPGPHRNMGPQGPHGMPPGPRGMQGPPGNMQGPPSVAMMGPPPRGQGGMMGPQ
GPMQGVVGMGPPMQNPPRTHCNMPGMGGMPVMGNMQGPPPGGMHRPPQGNMQGPPGNMQG
PPGNMQGPPGNMQGLPGNMQGPPSYMQHQVGQNSGPMMHGMGQQGPNGKGDTRGPPNHHM
GPPPGGQGGSGGSDQGSGSYWGDSEQGRRGPSDFNEGGQDFHGRREESCRRGFGQDYQGG
HRGGGQGGEGGNWGSSEERFPHDVGEFRGRRDDRYRGGGQGHPGGRGFPDEFGVQEENFD
ASNEMGGGWDNGERGRPPRGGGPPRGGGGGGGRRQGLLPNPDEFPPHYEEGRRQEAWEGG
RNQGHEAYRENQRSEHGQPHNSPSPANREHSSCLQGLDMASLPPRKRPWHDGSGTGDRDS
PGAGAEDRTAGRPPQREEGGGRGIWRGAPRGAPRGGGRGQ
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacatcatctccccgccacggttcttccacatgccacggttccagcaccag
gcgccgcggcagctcttttacaagcggcccgacttcgcccagcagcaggccatgcagcag
ctcaccttcgacggcaagcgcatgcggaagtctgtcaaccgcaaaaccattgactacaac
ccctcggtcatcaggcatctggagaatcgtttgtggcagcgagaccacagagatttacgt
gccatccaaccagatgcaggatgttacaatgatcttgttcctcctgtgggcattgtgagt
tatcccatgaacgcagtcaccacaaagtttgttcgaacctccacgaacaaagtcaagtgc
cctgtctttgtcataaggtggactcctgaggggaggcgacttgtcaccggagcctccagt
ggggagttcaccttgtggaacggactcaccttcaactttgagaccatcttacaggcccat
gacagccctgtgcgggccatgacctggtctcacaacgacatgtggatgttgacagccgac
cacggcggctacgtcaaatactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctcacctacggataataaatttgccacttgc
tctgacgacggaaccgtacgcatctgggactttctacgctgttacgaggagagaattctc
agaggtcacggagctgacgtgaagtgcgtggactggcaccccactaaaggcctggtggtt
tccgggagcaaagacagccagcagccaatcaaattctgggatcccaaaagcgggcagagt
ttggccacacttcacgcccataagaacacggtgatggaggtgaagtggaacctgaatggt
aactggttgctgacagcgtcccgcgaccacctgtgtaagctctttgacatccgcaacctc
aaggaggagctgcaggtgttccggggccacaagaaagaggccacagctgtagcatggcac
cctgtccacgagggcctgtttgccagcggaggctcggacggatccctcctcttctggaac
gtaggggtggagaaggaggtgggtggtatggagatggcccatgagggcatgatctggagc
ctggcgtggcacccacttgggcacatcctctgctctggatccaacgaccacaccagtaaa
ttctggaccaggaatcgcccaggggacaagatgagggacagatacaatctgaatttgtta
ccagggatgtcagaggatggagtggaatacgatgatatggagccaaacagtttagctgcc
attcctggcatggggatccctgaccagttcaaagctgccatggaacaagaggcaagcggt
aaagagactgcatccgaggaggagatgagcatcccaggtttggattgggggattgaggag
attttacagaaagacctgaagaaagtgccacagaagaaggtcccctacgccaaacccatc
cctgcccaattccaacaggcctgggcagataataaggttcttctcatgcccccaggagga
gagaagaagaaaatggacgagaagaccaacaccaacccgatgatgctagagcaaatgaag
atggaccgtttgaatccgatggacgggaacatgcctcccccaggaggcccacaaggaccc
atgccacctttccctggccagggaggacccatgcccccaccccctcagggcttcccccag
tctatgccacctcagcagatgccccacatcattggcatgatgggtcctccggaccaccac
gggccccagggcatgcagaggcaccccggcccccacagaaacatgggcccccaggggcct
cacggcatgcctcccggacccagagggatgcaggggccgcccggaaacatgcagggcccc
ccgtcggtagcaatgatggggccccctcctcgaggccaggggggcatgatgggcccacag
ggacccatgcagggagtagtggggatggggcctcccatgcagaaccctccaaggacacat
tgcaacatgccaggcatggggggcatgcctgtgatgggtaacatgcaggggccacccccg
ggtgggatgcacagaccaccgcagggtaacatgcaaggaccccctggcaacatgcagggc
ccccctggaaacatgcaaggacccccaggcaatatgcagggactaccaggcaacatgcag
gggcctccgtcctacatgcagcaccaggtgggccaaaactctggacccatgatgcatggg
atggggcagcaaggacccaatggcaaaggagatacccgagggcctcccaaccaccacatg
ggtcctccacctggaggccagggcggctctgggggctccgaccagggctccggttcttac
tggggagactccgagcaggggcgccgcggaccctcagactttaatgaggggggccaggac
ttccacggacggagagaggagagctgcaggcgagggttcggccaggactaccagggaggc
cacagagggggagggcaaggaggagaagggggaaactggggctcttctgaggaaagattt
ccccacgatgtgggagagttccgaggccgcagggatgacaggtacagagggggtggacag
ggtcaccctggggggagggggttccctgatgagtttggcgtgcaggaggagaactttgac
gcctcaaatgagatgggtggaggttgggacaacggagagagggggagacccccccgagga
gggggcccacccagaggaggaggaggtggtggaggtagacgccagggcttgctccccaac
cccgatgagttccccccacactatgaggaaggcagacgtcaagaggcctgggagggaggg
cgaaatcaaggtcacgaggcttaccgagagaatcagcgctcggagcatggccaaccgcac
aatagcccgtcccctgccaaccgcgagcactcctcctgcctgcagggcttggacatggcc
tcactgcccccacgtaaacgcccgtggcacgacggctcgggcaccggagaccgagactcc
ccgggagcaggggcagaggacaggacagcaggccgacccccccagagagaggaaggaggc
ggcagagggatctggaggggagcgccacgtggggcccccagagggggagggcgtggacag
tag
DBGET
integrated database retrieval system
