Coregonus clupeaformis (lake whitefish): 123481340
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Entry
123481340 CDS
T08357
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
123481340
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123481340
BRITE hierarchy
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
Fib_alpha
U-box
zf-RING_6
ZapD
zf-RING_2
Spc24
Y1_Tnp
Baculo_PEP_C
ETFQO_UQ-bd
Alpha-mann_mid
Spc29
CRA
Motif
Other DBs
NCBI-GeneID:
123481340
NCBI-ProteinID:
XP_045068658
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MAQQGVLLDQDQFCCSVCLDLLKEPVTIHCGHSYCRSCIEGCWDQDVLKGVYSCPQCRET
FTPRPTLRKNNMLAELVEKLKKTGLQAAPPPALCYAGPGDVACDFCTGTRKQKALMSCLV
CLASYCETHLQPHYEFPAFKKHKLVKATAQLQEKICSHHDKLLEVYCRTDQQCICYLCTM
DEHKGHETVSAAAERTEKQRQLGMSQQKVQQRFQESEKELQQAVESLKRSAQAAVEDSDK
IFTELIRSIERRRSEVKELIRAQEKAQVSQAEGLLEQLEQEIAELRKRSTELEQLSHTED
HIHFLQSYQSLSGTSVSSDLPSIVVRPLQYFGDVSKTVSELRQKLEDFLQGEWTKISTTV
NIVDVVLPPEPKTREQFLQYSCQLTLDPNTADTQLFLSKGNRKVTYTDQEQPYPVHPDRF
TNNQVLCREGLSGRCYWEVEWSGECVYTAVSYKDISRTGTDGSFGYNNKSWSLQCYNGSY
CFIHNNVRTKVSGPRSSRVGVDLDHKAGTLSFYSVSDTMTLLHSVQTTFTQPLYPGFLFN
FIFTGTAELVKL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaaggagttctgctcgaccaggaccagttctgttgttctgtctgtctggat
ctactgaaggagccggtcaccatccactgtggacacagttactgtaggagctgtattgag
ggctgctgggatcaggatgttctgaaaggtgtctatagctgtcctcagtgcagagagacc
ttcactccaaggcctactctgaggaaaaataacatgttggctgagttggtggagaaactg
aagaagacaggactccaggctgctccccctcctgctctgtgctatgctggacctggagat
gtggcgtgtgatttctgcactgggaccagaaagcagaaagccctcatgtcctgtctggtg
tgtctggcctcttactgtgagactcacctccaacctcactatgaatttcctgctttcaag
aagcacaagctggtcaaagccaccgcacaactacaggagaagatctgctctcatcatgac
aaactgctggaggtttactgtcgtaccgatcaacagtgtatctgttatctgtgtacaatg
gatgaacataaaggccatgaaacagtgtcagctgcagcagagaggactgagaaacagagg
cagctggggatgagtcagcagaaggtccagcagagattccaggagagtgagaaggagctc
caacaggctgtggagtctctcaagcgctctgcacaggcagcagtggaggacagtgataag
atctttaccgagctgatccgctccattgagagaaggcgctctgaggtgaaggagctgatc
agagcccaagagaaggctcaagtgagtcaagctgaaggactcctggagcaactggagcag
gagatagctgagctgaggaagagaagcactgagctggagcagctctcacacacagaggat
cacatccatttcctccagagttatcagtctctctccggtaccagtgtatcttcagactta
cccagcatcgttgtccgtcctcttcagtactttggagatgtgagtaagactgtgtctgaa
ctgagacagaaactagaagacttccttcaaggagaatggaccaagatctccactacagtg
aatatagtggatgttgtactgcctccagagcccaagaccagagaacagttcttacaatat
tcctgtcagctcacactggacccaaacacagcagacacacaactctttctgtctaaaggg
aacagaaaggtgacctatacagaccaagaacaaccatatcctgttcatccagacagattc
acaaacaaccaggttctgtgtagagagggtctgtctggacgctgttactgggaggtggag
tggagtggggagtgtgtttatacagcagtctcatataaagacatcagcagaacagggaca
gatggttcatttggatacaataacaagtcctggagtttacagtgttataatggtagttat
tgtttcatacacaataatgttagaactaaagtatcaggccctcggtcctccagagtagga
gtggacctggatcacaaggcaggtactctgtccttctacagtgtctctgacacaatgacc
ctcctccacagtgtccagaccacattcactcagcccctctatcctgggtttcttttcaat
tttattttcactggtactgctgagctggttaaactgtag
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