Coregonus clupeaformis (lake whitefish): 123481362
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Entry
123481362 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM47-like
KO
K12006
tripartite motif-containing protein 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
123481362
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123481362
BRITE hierarchy
Motif
Pfam:
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_6
zf-RING_2
zf-RING_5
U-box
Gp58
Baculo_PEP_C
V_ATPase_I
DUF4407
TMPIT
Motif
Other DBs
NCBI-GeneID:
123481362
NCBI-ProteinID:
XP_045060930
LinkDB
All DBs
Position
19:complement(47499628..47511035)
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AA seq
365 aa
AA seq
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MAEATLEDKDLITCSICLDLLKDPVTTACGHSYCMGCIKDCWDQDDLKGVYSCPLCMESF
TPKPVLRKNILLAELVEKQKKTRLKPAPPARCYAGPGDVECDFCTGRKLKAVKSCLVCLA
SYCKTHLQPHYESPAFKKHKLIDVTEQLQENICSHHDKLLEVYCCTDQQCICLLCVLDEH
KGHDTVSAAAERTERQLRTKHFNQLRENQQKSQQRIQEREKEMQDLKQAVDSLKRSAQVE
LEDSERIFTELIHSIKNQSSEVKELIRAQEKAEVSRAEGLLGKLEQEVTELWRKDAEIKQ
LSHTEDHIHFLQSFPSFGVSPESAALPSIIINPHISFEKVKKIVSELTEQLEDACKKQNV
IISES
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaactttagaagataaggatttgattacctgttcaatctgtctggatcta
ctgaaggatccagtgactactgcttgtggacacagttactgtatgggctgtattaaggac
tgctgggatcaggatgatctgaaaggggtctacagctgtcccttgtgcatggaaagcttc
accccaaaacctgtcctgaggaaaaacatcttattggctgaattagtggagaaacagaag
aagacaagactcaaacctgctcctcctgctcgctgttatgctggacctggagatgtggag
tgtgacttctgcactgggagaaaactcaaagcagtcaagtcctgtctggtgtgtctggcc
tcttactgtaagactcacctccagcctcactatgaatcccctgcctttaagaaacacaag
ttgattgatgtcactgaacaactacaggagaatatttgctcacatcatgacaaactgctg
gaggtttactgctgtactgatcagcagtgtatctgtctgctgtgtgtgctggatgaacat
aaaggccatgatacagtctcagctgcagcagaaaggactgagagacagttaaggaccaaa
cacttcaatcagttgagagagaatcagcagaaatcccagcagagaatccaggagagagag
aaggagatgcaggacctgaaacaggctgtggattctctgaaacgctctgcacaggtggaa
ttagaggacagtgagaggatctttactgagctgatccactccattaaaaatcaaagctct
gaggtgaaggagctgatcagagcccaggagaaggctgaagtgagtcgggctgaaggactc
ctggggaaactggagcaggaggtgactgagctgtggaggaaagatgctgagataaagcag
ctctctcacacagaggaccacatccatttcctccagagtttcccatctttcggtgtctct
cctgaatctgctgccttacccagcatcattattaatccacacatctcctttgaaaaggtt
aaaaagattgtctcagaactgacagagcaactggaggacgcctgcaagaagcaaaatgtc
atcatatccgagagttaa
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integrated database retrieval system
