Coregonus clupeaformis (lake whitefish): 123483187
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Entry
123483187 CDS
T08357
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K28076
finTRIM family protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
123483187
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123483187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRIM_CC
PRY
zf-B_box
zf-RING_UBOX
zf-C3HC4_4
SPRY
zf-C3HC4
zf-C3HC4_2
U-box
zf-C3HC4_3
zf-RING_6
DUF8516
ZapD
RING_XB3-XBAT31
YscO-like
zf-RING_5
zf-RING_2
ANCHR-like_BBOX
Spc24
NrnB_C
Y1_Tnp
Borrelia_P83
MSC_0620_UU052
DDE_Tnp_IS240
CLIP1
Motif
Other DBs
NCBI-GeneID:
123483187
NCBI-ProteinID:
XP_045068664
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MAQQGVLLNQDQFCCSVCLHLLKEPVTTACGHSYCRSCIEDCWDQDVLKGVYSCPQCRET
FTPRPNLRKNNMLAEVVEKLKKTGLQAAPPPALCYAGPGDVECDFCTRTRKQKALMSCLV
CLASYCETHLQPHYESPAFKKHKLVKATAQLQEKICSDHDKLLEVYCRTDQQCICMLCTM
DEHKGHDTVQAAPERTEKQRQLGMSQQKVQQRSQEREKELKELQQAVKYLKRSAQAAVVD
SDKIFTELIRSIEKRRSEVKELIRAQEKAQVSQAEGLLEQLEQEIAELRKRSTELEQLSH
TEDHIHFLQSYQSLSGTSVSSDLPSIVVRPLQYFGDVSKTVSELREKLEDVLKGEWTKIS
TTVNIVDVVLPPEPKTREQFLQFSCQLTLDPNTAHTHLSLSKGNRKVTFTDQEQPYPVHP
DRFTNWCQVLCREGLSGRCYWEVERSALFVVTAVSYKDISRTGKDGAFGHNNKSWSLVCS
SGDYWFRHNNVETKVSGPRSSRVGVDLDHKAGTLSFYSVSDTMTLLHRVQTTFTQPLYPG
FWLSGAAELVKL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcagggagttctcctcaaccaggaccagttctgttgttctgtctgtctgcat
ctactgaaggagccggtcactactgcctgtggacacagttactgtaggagctgtattgag
gactgctgggatcaggatgttctgaaaggtgtctatagctgtcctcagtgcagagagacc
ttcactccaaggcctaatctgaggaaaaataacatgttggctgaagtggtggagaaactg
aagaagacaggactccaggctgctccccctcctgctctgtgctatgctggacctggagat
gtggagtgtgatttctgcactcggaccagaaagcagaaagccctaatgtcctgtctggtg
tgtctggcctcttactgtgagactcacctccaacctcactatgaatctcctgctttcaag
aagcacaagctggtcaaagccaccgcacaactacaggagaagatctgctctgatcatgac
aaactgctggaggtttactgtcgtaccgatcagcagtgtatctgtatgctgtgtacaatg
gatgaacataaaggccatgatacagtgcaggctgcaccagagaggactgagaaacagagg
cagctggggatgagtcagcagaaggtccagcagagatcccaggagagagagaaggagctg
aaggagctccaacaggctgtgaagtatctcaagcgctctgcacaggcagcagtggtggac
agtgataagatctttaccgagctgatccgctccattgagaaaaggcgctctgaggtgaag
gagctgatcagagcccaagagaaggctcaagtgagtcaagctgaaggactcctggagcaa
ctggagcaggagatagctgagctgaggaagagaagcactgagctggagcagctctcacac
acagaggatcacatccatttcctccagagttatcagtctctctccggtaccagtgtatct
tcagacttacccagcatcgttgtccgtcctcttcagtactttggagatgtgagtaagact
gtgtctgaactgagagagaaactagaagacgtccttaaaggagaatggaccaagatctcc
actacagtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttc
ttacaattttcctgtcagctcacactggacccaaacacagcacacacacacctctctctg
tctaaagggaacagaaaggtgacctttacagaccaagaacaaccatatcctgttcatcca
gacagattcaccaactggtgccaggttctgtgtagagagggtctgtctggacgctgttac
tgggaggtggagaggagtgcgttgtttgttgttacagcagtctcatataaagacatcagc
agaacagggaaagatggtgcatttggacacaataacaagtcctggagtttagtgtgctct
agtggtgattattggttcagacacaataatgttgagactaaagtatcaggccctcggtcc
tccagagtaggagtggacctggatcacaaggcaggtactctgtccttctacagtgtctct
gacacaatgaccctcctccacagagtccagaccacattcactcagcccctctatcctggg
ttttggctctctggtgctgctgagctggttaaactgtag
DBGET
integrated database retrieval system
