Coregonus clupeaformis (lake whitefish): 123484166
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Entry
123484166 CDS
T08357
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
123484166
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123484166
BRITE hierarchy
Motif
Pfam:
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_4
SPRY
zf-C3HC4_2
zf-C3HC4
U-box
zf-C3HC4_3
zf-RING_6
ZapD
zf-RING_2
zf-RING_5
Fib_alpha
YscO-like
Spc24
Y1_Tnp
LMBR1
DASH_Dad3
Motif
Other DBs
NCBI-GeneID:
123484166
NCBI-ProteinID:
XP_045070110
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MAQQGVLLDQDQFCCSVCLDLLKEPVTTACGHSYCRSCIEGCWDQDVLKGVYSCPQCRET
FTPRPNLRKNNMLAELVEKLKKTGLQAAPPPALCYAGPGDVACDFCTGTRKQKALMSCLV
CLASYCETHLQSHYESPALKKHKLVKATAQLQEKICSHHDKLLEVYCRTDQQCICYQCVM
DEHKGHDTVSAAAERTEKQRQLGMSQQKVQQRFQEREKDLKELQQAVESLKRSAQAAVED
SDKIFTELIRSIERRRSEVKELIRAQEKAQVSQAEGLLEQLEQEIAELRKRSTELEQLSH
TEDHIHFLQSYQSLSGTTVSSDLPSIVVRPLQYFGDVSKTVSELREKLEDVLKGEWTKIS
TTVNIVDVVLPPEPKTREQFLQYSCQLTLDPNTAGTHLSLSEGNRKVTYTDQVQPYPVHP
DRFTNWCQVLCREGLSGRCYWEVEWSGEDVYTAVSYKDISRTGTDGAFGYNNKSWSLVCY
SGGYCFIHNNVVTKVSGPQSSRVGVDLDHKAGTLSFYSVSDTMTLLHRVQTTFTQPLYPG
FRVYGTAELVKL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcagggagttttgctggaccaggaccagttctgttgttctgtctgtctggat
ctactgaaggagccggtcactactgcctgtggacacagttactgtaggagctgtattgag
ggctgctgggatcaggatgttctgaaaggggtctatagctgtcctcagtgcagagagacc
ttcactccaaggcctaatctgaggaaaaataacatgttggctgagttggtggagaaactg
aagaagacaggactccaggctgctccccctcctgctctgtgctatgctggacctggagat
gtggcgtgtgatttctgcactgggaccagaaagcagaaagccctcatgtcctgtctggtg
tgtctggcctcttactgtgagactcacctccaatctcactatgaatctcctgctttgaag
aagcacaagctggtcaaagccaccgcacaactacaggagaagatctgctctcatcatgac
aaactgctggaggtttactgtcgtaccgatcagcagtgtatctgttatcagtgtgtgatg
gatgaacataaaggccatgatacagtgtcagctgcagcagagaggactgagaaacagagg
cagctggggatgagtcagcagaaagtccagcagagattccaggagagagagaaggacctg
aaggagctccaacaggctgtggagtctctcaagcgctctgcacaggcagcagtggaggac
agtgataagatctttaccgagctgatccgctccattgagagaaggcgctctgaggtgaag
gagctgatcagagcccaagagaaggctcaagtgagtcaagctgaaggactcctggagcaa
ctggagcaggagatagctgagctgaggaagagaagcactgagctggagcagctctcacac
acagaggatcacatccatttcctccagagttatcagtctctctccggtaccactgtatct
tcagacttacccagcatcgttgtccgtcctcttcagtactttggagatgtgagtaagact
gtgtctgaactgagagagaaactagaagacgtccttaaaggagaatggaccaagatctcc
actacagtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttc
ttacaatattcctgtcagctcacactggacccaaacacagcaggcacacacctctctctg
tctgaagggaacagaaaggtgacctatacagaccaagtccaaccatatcctgttcatcca
gacagattcaccaactggtgccaggttctgtgtagagagggtctgtctggacgctgttac
tgggaggtggagtggagtggggaggatgtttatacagcagtctcatataaagacatcagc
agaacagggacagatggtgcatttggatacaataacaagtcctggagtttagtgtgttat
agtggtggttattgtttcatacacaataatgttgtgactaaagtatcaggccctcagtcc
tccagagtaggagtggacctggatcacaaggcaggtactctgtccttctacagtgtctct
gacacaatgaccctcctccacagagtccagaccacattcactcagcccctctatcctggg
tttagggtctatggtactgctgagctggttaaactgtag
DBGET
integrated database retrieval system