Coregonus clupeaformis (lake whitefish): 123491973
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Entry
123491973 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123491973
03015 mRNA surveillance pathway
123491973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123491973
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123491973
5.6.2.5 RNA 5'-3' helicase
123491973
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123491973
mRNA cycle factors
Common to processing body (P body) and stress granule
123491973
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
nSTAND3
SLFN-g3_helicase
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
123491973
NCBI-ProteinID:
XP_045079468
LinkDB
All DBs
Position
11:35874123..35890010
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AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVFCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSNAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGALKGKAGRGGRQRTRGMGNHGGSG
QSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggaactacttggggctgatacccagggctcggagtacgagtttaccgattttactcta
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggtgtcgatgatgtggccaaggcgagccaactcctc
gctgagttgaacttcgaggaggatgaagaggacacctattacaccaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatgtgtggtgttctgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagcaaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcagtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggttaagatcccctcggagcaggagcagctccgggcccgccagatcaccgcccag
cagatcaacaagctggaggagctctggaaggacaatcccacggccactctggaggacctg
gagaagcccggtgtagacgaggagccacagcatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttacccaagacggattcaggtgacatgcgactgatgcaggga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagctcctgtagaaataccccacaacttccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcgggttacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcccagggcctgcccgacctcaaccactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggcccccct
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtcgggtctgaaggtggtcaggctgtgtgctaagagcagagaggccatcgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagcta
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgatgagaagcgc
taccgggccctaaagcgcaccgctgagagagagctgctcatgaacgcggatgtgatctgc
tgtacttgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatcctc
atcgatgagagcacccaggccaccgagccagagtgcatggtacccgtggtcctgggtgcc
aagcagctaattctggtaggagaccactgccagcttggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagcgccttcccctccaac
atcttctacgagggctccctgcagaatggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaagcccatgttcttctacgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aaaatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gacttcatcatcctgtcatgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcatcgtgggt
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtagagggacccctcaacaacctgagagagagcttgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgacgcccgcgaggccctcatccctgggtctgcctatgatcgcagcaacgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcggccatgaacatgcctattcctttcaacttggtgatacctcccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggcgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtggcagtggg
caaagcaacgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcccagatgagccagcctggc
ctctcccagcctgaactgtcccaggacagttatctaggtgatgagttcaagtcccagatc
gacgtggctctatcgcaggactcgacttaccagggtgaacgtgcataccaacatgggggg
gtgactggactgtcacagtactaa
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