Capnocytophaga canimorsus: Ccan_01100
Help
Entry
Ccan_01100 CDS
T01582
Name
(GenBank) ATP-dependent helicase mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccm
Capnocytophaga canimorsus
Pathway
ccm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ccan_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccm03400
]
Ccan_01100
Enzymes [BR:
ccm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ccan_01100
DNA repair and recombination proteins [BR:
ccm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ccan_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEK22232
UniProt:
F9YPY7
LinkDB
All DBs
Position
complement(127183..130512)
Genome browser
AA seq
1109 aa
AA seq
DB search
MLKLGQSIVYSNLEKELNHNKSVDLNGLSGASLSFVITNLFRNTKRNLFVMLSDKEEAAY
FLNDLESLLGDEHVIFFPDSYRRPYQIEDTDNANVLLRAEVLNRLGSHQTPLVVVSYPEA
LFEKVITRKQLEKNTLKIKKGDSLSLDFLNEMLFTYNFNRTDFVTEPGEFSVRGGIVDVF
SFSNNEPYRIEFFGNEIESIRTFDVETQLSTQQLSKITIIPNIENKENEEVRQSILEYIS
EKTLFIAKDIDSFPQKIDKLFNKSVEIYEKLSNEVKHIAPEVLFCQSNELLECIGSFQSI
FTGANSLFSSEKIVFRTNPQPAFNKQFELLISYLNEKHEEGFTNYIICSTEQQAKRFDDI
FKEMEQKVYYQTAILSLHSGFVDSDNKINVFTDHQIFERYHKFHLKNGYAKKQAITLKEL
TQLTVGDYVTHIDHGIGKFAGLQKIEVEGKMQEAIKLIYGDRDVLFVSIHSLHKITKYNG
KDGKPPKIYKLGSGAWKALKQKTKARVKEIAFNLIQLYAKRKESSGFAFAHDSYLQNELE
ASFLYEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAV
LVPTTILAFQHYQTFSSRMKDFPVRIDYLNRFRTAKEKKNILEELAKGSLDIIIGTHQIV
NESVKYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARDLS
VINTPPPNRYPIDSQVIHFNEEIIRDAVAYEIQRGGQVFFINNRVENIREVAGMLQRLVP
DAKIAVGHGQMDGKKLEETMLAFMDGTYDVLVATTIIESGLDVPNANTIFINNAHNFGLS
DLHQMRGRVGRSNKKAFCYFITPPFVAMSDDARKRIQAIAQFSDLGSGFNIAMKDLEIRG
AGDLLGGEQSGFINEIGFETYQKILQEAIVELKENEFSELYQTKEEDKSYLNDTQIDSDF
ELLFPDTYVNRVAERLNLYNELSNITSEADLLTYEKNLIDRFGQLPPQAVDLLNSVRLKW
FATKMGIEKLVMKNGKMTGYFISDQESPFYQSSRFQKVLQFVQRHPDRCRMQEKETRNGL
RLLLHFNSINTIHQALKVMQLVFNEQHSF
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaactagggcaaagtatcgtttatagcaacctcgaaaaggaattaaatcataat
aagtccgttgatttaaacggactatcaggagcttcattatcatttgtcattaccaatctt
ttccgaaacacgaaaagaaatttgtttgtgatgctttcggacaaagaagaagcagcctat
tttctgaatgatttggaaagcctgttgggcgatgaacacgtaatatttttccccgatagc
taccgccgtccgtatcagattgaagacacggataacgccaatgttctgcttcgtgccgaa
gtgttaaaccgattgggctcacatcaaacgcctttggttgtggtgagttatcctgaggct
ctttttgaaaaggtaattactcgcaaacaactcgagaagaacactttaaaaattaaaaaa
ggagactctttatctttggatttcctcaatgaaatgcttttcacctacaacttcaaccga
acagattttgtcaccgaacccggggaattttcagttcgtggtggtattgtcgatgttttt
tctttctcgaacaacgaaccttatcgcattgagtttttcggcaatgaaatcgaaagtatc
cgaacttttgatgttgaaacacagctttctacacaacaattatcaaaaatcacgattatt
ccaaacatcgaaaataaggaaaatgaagaagtaaggcagtccattttggaatacatttcg
gaaaaaacgctttttatcgccaaggatattgatagtttccctcaaaaaatcgataaatta
tttaataaatccgttgaaatttacgaaaaactatcgaacgaagtcaaacatattgctcct
gaagtgcttttctgtcaaagtaatgaacttttggaatgtatcggctcttttcaatcaatt
ttcacaggagcgaactcattattttcttcagaaaaaatcgtttttagaactaatccacaa
cctgcattcaataagcaatttgaactattaatcagctatttaaacgaaaaacacgaagaa
ggttttaccaattacattatttgttccaccgagcaacaagcaaagcgttttgatgatatt
ttcaaggaaatggaacaaaaagtgtattatcaaaccgccattttatcgctacacagcgga
tttgtagattcggacaataaaatcaacgtctttaccgaccatcaaatttttgaacgttat
cataagtttcacctaaaaaatggatatgctaaaaaacaagccattacacttaaagagctc
actcaacttactgttggtgattatgttacgcatatcgaccacggcatcggaaagtttgca
ggattacaaaaaattgaagtagaaggcaaaatgcaggaagccatcaaacttatctatggt
gaccgcgatgtactttttgtcagcattcattccctacataaaattacgaaatacaacggc
aaagacggcaaacctccgaagatttacaaactaggttcgggagcgtggaaagccctgaaa
cagaagacaaaagctcgggttaaagaaatcgccttcaaccttattcaattatatgccaag
cgaaaagaatcaagcggttttgcttttgctcacgacagttatctgcaaaacgaattggaa
gcctcatttctttacgaagatacgcccgaccaaagcaaagctactgccgaagtcaaagcc
gatatggaaagtccgaaaccaatggataggctcgtttgtggcgatgttggctttggaaaa
acggaagttgctattcgcgcagcctttaaagcggttgataacggaaaacaagtagccgtt
ttggtacctacaaccattttggcatttcaacattatcagacatttagcagcagaatgaaa
gattttccggtgaggattgattacttaaaccgattccgaacggcaaaagagaaaaaaaac
attctggaagaactcgccaaaggttcactagacatcatcatcggaacacatcaaattgta
aatgaaagtgttaagtacaaagatttagggcttctaatcgttgatgaagagcaaaaattc
ggtgtaggggtgaaagacaaactcaaaacactgaaagaaaaccttgacgtactgacactt
acggcaactccgattccaagaacattgcaattcagtttgatggcagcaagggatttgtca
gtaatcaatacgcctccaccgaatcgatatcctattgatagtcaagttatccatttcaat
gaagaaattatccgtgatgccgttgcttacgaaattcagcgaggaggacaagtatttttc
attaacaatcgcgtggaaaatatccgtgaagtggcaggaatgctacaacgactcgttccc
gatgccaaaatagccgtaggtcacgggcaaatggacggcaaaaaactcgaggaaacgatg
cttgcctttatggacggaacttatgacgttttggtagcaacgaccatcatcgagagtggt
ttagatgtgcctaatgccaacacgattttcatcaataacgctcataatttcggcttgtcc
gacctacatcaaatgcgtggacgtgtgggacgaagcaacaaaaaagccttctgttatttc
atcacacctccatttgtggcaatgagtgatgatgctcgtaaacggatacaagccattgct
cagttttcggacttaggaagcggattcaatattgcgatgaaggatttggaaatacgagga
gcgggtgatttgctcggtggagaacaaagtggtttcattaacgaaatcggatttgaaacc
tatcagaagattttgcaagaagccatcgtagagctgaaagaaaacgagttttccgaattg
tatcaaacgaaggaagaagacaaatcatatctaaatgacacacaaattgatagtgatttt
gagcttttatttccggatacttacgtaaaccgagttgcggaacgattaaatctttacaat
gagctaagtaacatcacttcggaggccgatttactaacctacgaaaagaatctgattgac
cgctttggtcagttacctcctcaggctgtcgatttgctcaatagcgtacgtctgaaatgg
tttgcgaccaaaatgggaatcgaaaaattagtaatgaaaaacggaaaaatgacaggatat
tttatttccgaccaagaaagtccgttttatcaaagttctcgttttcaaaaagtattgcaa
tttgtgcaacgccaccccgaccgatgcagaatgcaagaaaaagaaacccgcaacggactg
cggttgttgcttcacttcaatagtatcaatactattcatcaagccttaaaagtgatgcaa
ttggttttcaacgaacaacactccttttaa
DBGET
integrated database retrieval system
