Campylobacter concisus 13826: CCC13826_0078
Help
Entry
CCC13826_0078 CDS
T00593
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cco
Campylobacter concisus 13826
Pathway
cco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCC13826_0078 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cco03400
]
CCC13826_0078 (mfd)
Enzymes [BR:
cco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCC13826_0078 (mfd)
DNA repair and recombination proteins [BR:
cco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCC13826_0078 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
DUF2443
UB2H
Motif
Other DBs
NCBI-ProteinID:
EAT97755
UniProt:
A7ZE35
LinkDB
All DBs
Position
complement(1197902..1200847)
Genome browser
AA seq
981 aa
AA seq
DB search
MQAKVYEYLLTHAPQILICEDDKEAALCADAASFAGFSAFKLPDFRAKKGDDLRSFNEEL
FEISSVLSKYYKFDGKKIIVSPFSTLLNPLPTQKNLESSTIKLKDNLNLNEFADLLIRFG
YECVDIVESVGEFSIRGEVVDIYGVNMDDPVRILLFGDEVESIRNYNTATQISNKNELSE
AEIVPFIANLSKDEFEKVSQKIEDMQSDALVSDLNSLGFWAIDSFSDYLKEFDSKLVKKI
DFEIYDAPEEKFKGIEILPEPKVYKDLEVTLNFDFFELNKSKSITVLSRNEGLFKGYELD
GFANVKLEISPLVVNLTSSDKIVVSLNKFEKKRRVKRSSLVVDELKVNDYVVHEDYGIGR
FLGLEKIKVLGATKEFVVIAYQNDDKLLLPVEHLNLIDRYIAQNGSMAVLDRLGKANFAK
IKEKVREKLFAIASKIVAMAAKRELIAGKILQKEDISYLNFVQDAGFSYTSDQQKAVNDI
KDELKSGKVMDRLLSGDVGFGKTEVAMNAIFTCIKSGFSAFFFVPTTLLSSQHYKTLSQR
FSKFGIKVFRLDRFSSAKEKSNLQKALKENEPIVCVGTHALLSVKAENLGLIVVDEEHKF
GVKQKEQLKEISQHSHILSMSATPIPRSLNMALSKIKTYSILATPPSSRLDVRTSVREWD
EKVIKEAIMRELRRGGQTFYIHNHIADIEQTANELRKILPKLRILILHSKINAKVAEDEM
MKFERGEYDLLLCTSIVESGIHLPNANTIIVENANKFGMADLHQLRGRVGRSDKQAYCYF
LVEDKDAISKDALKRLVALEGNSFLGAGSVLAYHDLEIRGGGNIIGEAQSGHIEAIGYSL
YLKMLEDEINKLLNQDSAKLDKIDLKLGVSAFLNQEFIREDRLRLEIYRRLSKCKEVSEV
YEIQSELEDRFGKIDTFTKQFLDLIIIKILALKAGIKTISNSEQNILITKNDDEKIRLKS
RSKDDDDVLAEILVYLRKDKR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaaaggtctatgagtatcttttaacacacgccccacaaattctcatctgcgaa
gatgacaaagaggcggcactctgcgctgatgcggccagttttgctggctttagcgccttt
aaactacctgattttagagctaaaaagggcgatgacctaagaagctttaacgaagagctc
tttgaaatttcatccgttcttagcaaatactataaatttgatggcaaaaagatcattgta
agcccatttagcacgcttttaaacccacttccaacgcaaaaaaacctagaaagctcaaca
atcaagctaaaagataatctaaatttaaacgaatttgctgacttgctcatacgctttggc
tacgagtgcgtcgatatcgttgagagcgttggtgaatttagcatacgcggcgaagttgtg
gacatttacggcgtaaatatggacgatcctgttagaattttgctctttggcgatgaggtg
gagagcattagaaactacaacaccgccacgcaaattagcaacaaaaatgagctaagtgag
gctgagatcgtgccttttatcgcaaatcttagcaaagacgagtttgaaaaagttagccaa
aagatcgaggatatgcaaagcgatgctttggtgagcgatctaaattctcttggattttgg
gcgatagatagctttagcgactacttaaaagaatttgactcaaagcttgttaagaagatc
gattttgaaatttatgacgcacctgaagagaaatttaagggcattgaaattttgcctgag
ccaaaggtctataaagacctagaagttactttaaattttgacttttttgagctaaataag
agcaaaagcataaccgttctttcaagaaatgaggggctttttaagggctatgagcttgat
ggctttgccaacgtaaagcttgagatttcgccccttgtagtaaatttaacctcaagcgac
aagatcgtagtatcacttaataaatttgagaaaaaaaggcgagttaaacgctcaagcctc
gtggtagatgagctaaaagtaaatgactatgtcgtgcatgaagattatggcataggcagg
tttttaggccttgaaaagatcaaggttttgggtgctacgaaagaatttgtagtaattgcc
taccaaaatgatgacaagcttcttttgccagttgaacatctaaatttaatagatcgttat
atcgcgcaaaatggctctatggcggtgcttgatcgcttaggcaaggcaaattttgccaag
ataaaagagaaggttagagaaaaactctttgcgatcgcttcaaagatcgtagcgatggcg
gcaaaaagagagctaatcgcaggcaaaattttacaaaaagaggatatctcttatctaaat
ttcgtccaagacgctggcttttcatatacgagcgaccagcaaaaagcggtaaatgatata
aaagatgagctaaaaagcggcaaggtgatggataggctgcttagcggagatgttggcttt
ggcaagactgaagttgcgatgaatgccatatttacctgcataaaatcaggctttagcgcg
tttttctttgtgccaacgacgcttcttagctcgcagcactacaagacgttaagccagaga
tttagcaaatttggcataaaggtctttaggctggatcgcttctcaagtgccaaagagaaa
tcaaacctgcaaaaagcgctaaaagaaaatgagcccatagtttgcgtgggtacgcatgcg
cttcttagcgtaaaggctgaaaatttagggcttatcgtcgttgatgaagagcataaattt
ggcgtcaagcaaaaagagcagctaaaagaaatttctcagcactcacacatcctaagtatg
agcgccacgccgataccaagaagcctaaatatggcgcttagcaagataaaaacatatagc
attttagccactccgccaagctcaaggctggatgtgagaacaagcgtgagagagtgggac
gaaaaggtcatcaaagaggcgattatgcgtgagctaagacgcggcgggcagaccttttac
atccacaaccacatcgcagacatcgagcagacggcaaatgagctaagaaaaattttgcca
aagcttagaattttgatacttcactcaaagataaatgcaaaagtcgctgaagatgagatg
atgaaatttgagcggggcgagtatgacctactactttgcaccagcatcgttgaaagcggc
atccacctgccaaatgcaaacaccataatcgtagaaaatgctaataaatttggcatggct
gacctgcaccagctgcgcggtcgcgtgggtagaagcgataagcaggcctactgctacttt
ttagtagaggataaagatgccattagcaaggacgctctaaaacgacttgtggcactcgag
ggcaactcatttttgggcgctggctcggtgctagcctatcacgaccttgagataaggggc
ggtggtaacatcatcggcgaggcgcaaagcggccacatcgaggctatcggctactcgcta
tatctaaagatgctagaagatgagataaataagcttcttaatcaagactccgcaaagctt
gataagatcgatctaaagcttggtgtgagcgcctttttaaatcaagaatttataagagaa
gataggctaaggcttgaaatttatagacgccttagcaagtgcaaagaggtgagtgaagtc
tatgagatacaaagcgagcttgaggatagatttggcaagatagatacatttacaaagcag
tttttagaccttatcatcatcaaaattttagctctaaaagctggcataaagacgatctca
aacagcgagcaaaacatactaataacaaaaaatgacgacgagaagatcaggctaaagtca
cgcagcaaggacgacgacgatgttttggctgaaattttggtctatctaagaaaggataag
agatga
DBGET
integrated database retrieval system
