Campylobacter concisus ATCC 33237: CCON33237_0726
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Entry
CCON33237_0726 CDS
T04635
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccoc
Campylobacter concisus ATCC 33237
Pathway
ccoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCON33237_0726 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoc03400
]
CCON33237_0726 (mfd)
Enzymes [BR:
ccoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCON33237_0726 (mfd)
DNA repair and recombination proteins [BR:
ccoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCON33237_0726 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
UvrB_inter
ResIII
DUF2443
SLFN-g3_helicase
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALF47415
UniProt:
A0A0M4SH11
LinkDB
All DBs
Position
724057..727002
Genome browser
AA seq
981 aa
AA seq
DB search
MQAKVYEYLLTHAPQILICEDDKEAALCADAASFAGFNVFKLPDFRAKKGDDLRSFNEEL
FEISSVLSKYYKFDGKKIIISPFSTLLNPLPTQKNLESSTIKLKDNLNLNEFADLLIRFG
YECVDIVESVGEFSIRGEVIDIYGVNMDDPVRILLFGDEVESIRNYNTATQISNKAELSE
AEIVPFIANLSKDEFEKVSQKIEDMQSDALVSDLNSLGFWAIDSFSDYLKEFDSKLVKKI
DFEIYDVPEEKFKGIEILPEPKVYKDLEVTLNFDFFELNKSKSITVLSRNEGLFKGYELD
GFANVKLEISPLVVNLTSSDKIVVSLNKFEKKRRVKRSSLVVDELKVNDYVVHEDYGIGR
FLGLEKIKVLGATKEFVVIAYQNDDKLLLPVEHLNLIDRYIAQNGSMAVLDRLGKANFAK
IKEKVREKLFAIASKIVAMAAKRELVAGKILQKEDISYLNFVQDAGFSYTSDQQKAVNDI
KDELKSGKVMDRLLSGDVGFGKTEVAMNAIFTCIKSGFSAFFFVPTTLLSSQHYKTLSQR
FSKFDIKVFRLDRFSSAKEKSSLQKALKENEPIVCVGTHALLGVKAENLGLIVVDEEHKF
GVKQKEQLKEISQNSHILSMSATPIPRSLNMALSKIKTYSILATPPSSRLDVRTSVREWD
EKVIKEAIIRELRRGGQTFYIHNHIADIEQTANELRKILPKLRILILHSKVNAKVTEDEM
MKFERGEYDLLLCTSIVESGIHLPNANTIIVENANKFGMADLHQLRGRVGRSDKQAYCYF
LVEDKDAISKDALKRLVALEGNSFLGAGSVLAYHDLEIRGGGNIIGEAQSGHIEAIGYSL
YLKMLEDEINKLLNQDSAKLDKIDLKLSVSAFLNQEFIREDRLRLEIYRRLSKCKEVAEV
YEIQSELEDRFGKIDTYTKQFLDLIIIKILSLKADIKTISNSEQNILITKNDDEKIRLKS
RSKDDDDVLAEILVYLRKNKK
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaaaggtctatgagtatcttttaacacacgccccacaaattctcatctgtgaa
gatgataaagaggcggcactttgtgctgatgcggccagttttgctggctttaacgttttt
aaattacctgattttagagctaaaaagggcgatgatctaagaagctttaacgaagagctt
tttgaaatttcatccgttcttagcaaatactataaatttgatggcaaaaagattatcata
agcccatttagcacgcttttaaacccacttccaacgcaaaaaaacctagaaagctcaaca
atcaagctaaaagacaatctaaatttaaacgaatttgccgacttgctcatacgctttggc
tatgagtgcgtcgatatcgttgagagcgttggcgagtttagcatacgtggagaagtgatc
gacatttacggcgtaaatatggatgatcctgttaggattttgctttttggtgatgaggtt
gagagtataagaaactataacaccgccacgcaaattagcaataaagctgagctaagcgaa
gctgagatcgtgccatttatcgcaaatttgagcaaagatgagtttgaaaaagttagccaa
aagattgaggatatgcaaagtgacgccttggtgagtgatctaaattcgcttggattttgg
gcgatagatagctttagtgactacttaaaagaatttgactcaaaacttgttaaaaagatc
gattttgaaatttatgatgtgcctgaggagaaattcaagggcattgaaattttacctgag
ccaaaggtttataaagatcttgaggttactttaaattttgacttttttgagctaaataag
agcaaaagcataaccgttctttcaagaaatgaagggctttttaagggctatgagcttgat
ggctttgctaatgtaaagcttgaaatttcgccccttgtagtaaatttaacctcaagtgat
aagatcgtagtctcacttaataaatttgagaaaaaaagacgagttaaacgctcaagtctc
gtggtggatgagctaaaggtaaatgactacgtcgtgcatgaagattatggtataggcaga
tttttggggcttgaaaagatcaaggttttgggcgcgacaaaggaatttgtggttatcgcc
taccaaaatgacgacaagcttcttttgccagtagagcatctaaatttgatagaccgctat
atcgctcaaaatggttctatggcggtgctggaccgcttaggcaaggcaaattttgccaag
ataaaagaaaaggttagagaaaaactcttcgcgatcgcttcaaagatcgtagcaatggcg
gcaaaaagagagcttgtggctggtaaaattttgcaaaaagaagacatctcttatctaaat
tttgtccaagacgctggcttttcatatacgagtgatcagcaaaaagcggtaaatgatata
aaagatgagctaaaaagtggcaaggtcatggataggctgcttagcggagacgttggcttt
ggtaagactgaagttgcgatgaacgccatatttacctgcataaaatcaggctttagcgca
tttttcttcgtgccaacgacgcttcttagctcgcagcattataagacactaagccaaaga
tttagcaaatttgacataaaggtctttaggctagatcgcttctcaagtgccaaagagaag
tcgagcctgcaaaaagcactaaaagaaaatgagccgatagtttgcgtgggaacgcatgcg
cttcttggtgtaaaggctgagaatttagggcttatagtggttgatgaagagcataaattt
ggcgttaaacaaaaagagcagttaaaagaaatttctcaaaattcacacatcttaagcatg
agtgccactcctataccaagaagcctaaatatggcgcttagcaagataaaaacatatagt
attttagccactccgccaagttcaagactggatgttagaacaagcgtgagagagtgggac
gagaaggtcatcaaagaggcgatcatacgtgagctaagacgtggcgggcagaccttttac
atccacaaccacatcgcagatatcgagcagacggcaaatgagctaagaaaaattttgcca
aagcttaggattttaatacttcactcaaaggtaaatgcgaaagttactgaagatgagatg
atgaaatttgagcggggcgagtatgacttgctgctttgcaccagcatcgttgaaagcggc
atccacttgccaaatgcaaacaccataatcgtagaaaatgctaataaatttggtatggct
gacctgcatcagctccgcggacgcgtgggtagaagcgacaagcaggcttattgctacttt
ttggttgaggataaagatgccattagtaaagacgctctaaaacgacttgtggcacttgaa
ggcaactcgtttttgggcgctggctcggtgttagcatatcacgaccttgagataaggggt
ggtggcaacatcatcggcgaggcacaaagcggccacatcgaggctatcggctactcgtta
tatctaaagatgctagaagatgagataaataagcttcttaatcaagactccgcaaagctt
gacaagatcgatctaaagcttagtgtgagcgcctttttaaatcaagaatttataagagaa
gatagactacgactcgaaatttataggcgccttagcaagtgtaaagaggtcgctgaggtc
tatgagatacaaagcgagcttgaggatagatttggcaagatagatacatatacaaagcag
tttttagaccttatcatcatcaaaattttatctctaaaagctgacataaagacgatctca
aacagcgaacaaaatatactaataacaaaaaatgatgacgagaagatcaggctaaagtca
cgtagcaaggacgatgacgatgttttggctgaaattttggtctatctaagaaagaataag
aaatga
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