Clostridium cochlearium: SAMEA4530647_2166
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Entry
SAMEA4530647_2166 CDS
T06756
Symbol
helD
Name
(GenBank) ATP-dependent DNA helicase rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03420
Nucleotide excision repair
ccoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4530647_2166 (helD)
03430 Mismatch repair
SAMEA4530647_2166 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_2166 (helD)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_2166 (helD)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530647_2166 (helD)
MMR (mismatch excision repair)
Other MMR factors
SAMEA4530647_2166 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
SLFN-g3_helicase
PhoH
UvrD_C_2
DEAD
MnmE_helical
AAA_30
T2SSE
ResIII
nSTAND3
NACHT
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SNV88199
LinkDB
All DBs
Position
1:complement(2140244..2142376)
Genome browser
AA seq
710 aa
AA seq
DB search
MDDLDLNKEIQKELEFNFEKEKLKETIKIINQEILNYLNQRKQTINYITEYRKNFLDEYK
DDEDEIVEYFDHEKFLIEEEFKFIDKRLKELTVLSSSPYFGKVIFKDDEVEETIYIGRFG
LTLKNSYTPLIVDWRAPISALFYSGNIGKVSYNAPIGKIETEVSLKRQLIIKKARLLGIF
DTELNVKDDILQMVLSSNTADKLKDIIMTIQEEQDNLIRQPRNKTIIVDGVAGSGKTTIA
LHRVAYLLYNYREVLQDKVLILGPNDIFIDYISMVLPSLGEVGVKQTTFREFALSLLGIE
NIMSFRDYMENMTNGDESFIQDIIYKNSIKYIDKLDEFIENIEKYYFKIQDIKFYDEVIM
SKNEIEEMLFKDFKFMPLFKRSNRIKRVIYSRIKDCRDAKVREIQKKYEKELNNMTLEEK
NLHGTRLEFERRINIREVISEVIRRKKELFWLNNPNVLELYNKFNENKELTQDDLAPILY
LRIKLEGIKYPKDVKHVVIDEAQDYSALQFKVIKELTGCSSMTVLGDKNQRLIPYSEDIA
MENLHKYLDLKDMEYFKLDKSYRSTQEIMKYANKYLKDDFIVPLVRSGEKVIEKEVKTYK
ELKEEILKSINVFREKGYESIAIICKNSMEVNKINDMLKDSIYIKTINREDILYTSGESV
VPSYFAKGLEFDAVILIDSNIKDENYEKIMYVMSTRALHELKVYKIKESV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttagatttgaataaagaaattcaaaaggagttagaatttaattttgaaaaa
gaaaaattaaaagaaaccataaaaataatcaatcaagaaattttgaactatttgaatcaa
aggaaacaaactattaattatataacagaatatagaaaaaattttcttgatgaatataaa
gatgatgaagatgagatagtggaatattttgatcatgaaaaatttcttatagaggaagag
tttaaatttattgataaaagacttaaagaacttacagtattatcgtctagtccttacttt
gggaaagttatatttaaggatgatgaagtagaagaaacaatatatatagggagatttgga
cttactttaaaaaattcttatacgcctttaatagtagattggagagcaccaatatctgca
ttgttttactctggaaatattggcaaagtgtcttataatgctcccatagggaaaatagaa
actgaggtatctttaaaaaggcaattaataataaaaaaagcaagactattagggatattt
gatacagaactaaatgtaaaagatgatatattgcaaatggtattaagtagcaatacggca
gataaactcaaagatataattatgacaatacaagaagaacaagataatttaataagacaa
cctagaaacaaaactataatagtagatggtgtagcaggtagcggtaaaacaactatagct
ttacatagagtagcttatttactatacaattatagagaagttttacaggataaagtatta
atattaggacctaatgatatatttatagattatatatctatggtattaccaagccttgga
gaagtaggggtaaaacaaactactttcagagagtttgcattaagtttattaggtatagaa
aatataatgagctttagagattatatggaaaatatgactaatggcgatgaatccttcata
caagatataatatataaaaactctattaaatatatagataaattagatgaatttatagaa
aacatagaaaaatattattttaaaatacaagacattaagttttacgatgaagttatcatg
agtaaaaatgaaatagaagaaatgttgtttaaagattttaaatttatgcctttatttaaa
agaagcaatagaataaaaagagttatttattctagaattaaggattgcagagatgctaaa
gttagggaaatacaaaaaaaatatgaaaaagagcttaataacatgactctagaagaaaaa
aatttacatggaacaagattagagtttgaaagaagaatcaatataagagaagtaatatct
gaggtaattagaagaaaaaaagaacttttctggttaaacaatcctaatgttttagagcta
tataataaatttaatgaaaacaaagaacttacacaggacgatttagctccaattttatat
ttaagaataaaactagaaggtattaaatatcctaaggatgttaaacatgtagttatagat
gaagcacaagattacagtgcattacaatttaaggttataaaagagttaacaggatgttca
tctatgactgttttaggcgataagaatcaaaggcttataccatatagtgaagacatagct
atggaaaatctacataaatatttagatcttaaagatatggaatatttcaagttagataaa
agttacagatcaactcaagaaataatgaaatatgctaataaatatttaaaagatgatttt
atagttccattagtaagaagtggagaaaaggttatagaaaaggaagtaaaaacttataaa
gaattaaaagaagaaatactgaaaagtataaatgtatttagagaaaaaggatatgaaagt
atagctataatatgcaaaaattctatggaagttaataaaataaatgatatgctaaaggat
agtatatatataaaaactattaacagggaggatattctatacacctctggtgaaagtgta
gttccttcatattttgcaaaggggttagaatttgatgcagtaatattaatagacagtaat
attaaggatgaaaactatgaaaaaattatgtatgttatgtcaactagagcattgcatgaa
ctaaaagtttacaaaataaaggaatctgtgtaa
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