Campylobacter coli OR12: ATE51_04360
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Entry
ATE51_04360 CDS
T04527
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ccoo
Campylobacter coli OR12
Pathway
ccoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE51_04360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoo03019
]
ATE51_04360
Messenger RNA biogenesis [BR:
ccoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATE51_04360
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ALV00683
UniProt:
A0A5Y6JBW7
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All DBs
Position
complement(2010987..2013017)
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AA seq
676 aa
AA seq
DB search
MNENNKGNSENTNNPNSNSKNNKRYKYRNRRKKLADSISENSQNSTHEFSNNEKINTKKN
STNTQPLEGENVEKPSEKKKKRNRNLPSKLTGNEDWQIALAECIEANRISHENRLHPLKY
NNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDIIIPDFDYVR
KIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEHGLKAERKWFR
PVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKIDQTPIDGYPTDLG
RLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGRVIMSTFSSNIHRVY
QAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDADEVSKYKDNEVLIVTTG
SQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASVSAVLDYLLKAGAKVAYQE
FSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKHKETAMKCGIPERNIYLMSDG
DQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVIDRQKLADSGIVVIIAQLDKASKT
LINKPRVFSYGLVADKQDHAFSKEMAEVLGQFFVNVKDEVLNDPRFLENQIRQVLRKHIF
RKIKKYPTIVPTIFVM
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacaacaaaggaaatagtgaaaatacaaacaatcctaactcaaattcaaaa
aacaacaagcgctataaatacagaaatcgtagaaaaaaattagccgattctatcagtgaa
aattctcaaaattcaactcatgaattttctaacaacgaaaagataaataccaagaaaaat
tctacaaatactcaacctttagagggtgaaaatgtagaaaaaccaagtgagaaaaagaaa
aaaagaaatcgcaatcttccttcaaaactcacaggtaatgaagattggcaaatcgctctt
gcagaatgcatagaagctaaccgtatttcacatgaaaaccgcttacaccctttaaaatat
aataattctagcgagcataaaatccgcatcactcctttaggaggtttaggagaaattggt
ggaaatatcagtgtttttgaaaccaataaagatgcaattatagtagatataggtatgagt
tttcctgatggaactatgcatggggtagatattatcatccctgattttgactatgtaaga
aaaattaaagataaaattcgtggtatagtgatcactcatgcacacgaagatcatatcggt
gcagtgccttatttctttaaagaattccaatttcctatctacgctacacctttggcttta
ggaatgatttcaaacaaatttgaagaacatggcttaaaagcagaacgcaaatggtttcgc
cctgtagaaaaacgccgtgtttatgagataggcgaatttgatatagagtggatccacatc
acgcattctatcattgatgcttcagcgcttgcgatcaaaacaaaagcaggaacgattatc
cacacaggtgattttaaaattgatcaaactccaatcgatggctatccaacagacttagga
cgtttggcacattatggagaagaaggggttttatgtcttttaagcgatagtacaaattcg
tacaaagaaggttatacaaaaagtgaaagctccgtagggccaacttttgatcaaatcttt
gcacgtaccaaaggcagggtgatcatgagtacttttagttctaatatccaccgcgtttat
caagctatcacttatggtttaaaatacggtagaaaagtttgtgtgatcggtcgttctatg
gaaagaaatctttataccactatggaattaggctacatcaaacttgatagaaaaattttc
atcgatgctgatgaagtaagcaaatataaagacaatgaagtgcttatcgtaactacagga
agtcaaggcgaaaccatgagtgcgctttatagaatggcaactgatgagcataaatttata
aaaatcaaacctacagatcaagtgattatttcagctaaagccataccaggaaatgaagca
agtgtttctgcggtgcttgactatcttttaaaagcaggagctaaagtagcgtatcaagaa
tttagtgaaattcatgtaagcggacacgctagtatagaagagcaaaagcttatgctaacc
cttactaagcctaaatttttcctaccagttcatggagaatacaatcacatcaccaaacac
aaagaaacagcgatgaagtgcggtatccctgaaagaaatatttatcttatgagtgatggc
gatcaagtagaactttgccaaaaatatgtcaaacgcataaaaaccgtaaaaacaggtaaa
gtttttgtagataatcaaatcaataaacaaatcgccgatgatgtagtaattgatcgtcaa
aaacttgcagatagcggtatagttgtcatcatcgcacagcttgataaagcaagtaaaaca
ttgattaataaaccaagagtatttagctatggacttgtagcagataaacaagatcatgct
ttttctaaagaaatggcagaggttttaggacaattttttgtcaatgttaaagatgaagtg
cttaatgatccaagatttttggaaaatcaaattcgtcaagtattgagaaaacatattttt
agaaagattaaaaaatatccaaccatagttccaactatttttgtaatgtaa
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