Corynebacterium coyleae: CCOY_04465
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Entry
CCOY_04465 CDS
T09177
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccoy
Corynebacterium coyleae
Pathway
ccoy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCOY_04465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoy03400
]
CCOY_04465 (mfd)
Enzymes [BR:
ccoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCOY_04465 (mfd)
DNA repair and recombination proteins [BR:
ccoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCOY_04465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
CbiX
AAA_16
RecG_dom3_C
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WJY79506
LinkDB
All DBs
Position
908575..912204
Genome browser
AA seq
1209 aa
AA seq
DB search
MTDNTPPVLGGLLTQALTDPKLKGLVTHVGEDSLHITGIDQARSWTAGAIARETPVLLVT
ATGHEAEDLAAELKAMLGDDKVAQFPAYETLPHERLSPAADIVGRRAKVLWDMPRVIVAA
ARAVCQPVLPAIEPIRVAVDQEADFEDLTQQLVHFAYNHVDMVAGRGEFATRGGIIDVFP
TTAQNPVRIEFWGDEVTDIRSFAVADQRTIEEVGAVELFPARQLLIDDTVAAKADDLARK
FPSNPTLSSLLARISEKQPADGMEAIIPALTDKTYSVLPELMPAGSVVLVTNPEKVRTRI
ADLEATDREFLEAGWEAAAMGAEGPVAVEGLDVSASSYRSFESLEVSASKAGNAWWTFAP
PGMFAADDAETLPLEFEAAPAPKGDPKEIEQLYATLKLHVTQNHGKAAYVAPAKGAIDRM
AERLREHGVSARVATPGLEPVDGAVTLYQALSHAGLVFGGPNLVVVTETDLTGNRVGDIA
GAKRRAPRRRNRVDPLALQPGDFVVHDTHGIGKFVKMAERTIKAGDEASRREYIVLEYQP
AKRGQPGDQLWVPMESLDLLSKYTGGEKPSLSKMGGSDWKSTKRKARAAVREIAGELVEL
YAKRQAAPGHAFAPDTPWQLEMEDAFPFVETEDQLNAIEAVKEDMEKPTPMDRVIVGDVG
FGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFTQRMDGFGVEVRELSRFTSTAD
SKKILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDV
LTMTATPIPRTLEMSLTGIREMTSITTAPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQ
VFYIHNKVSDIEKTARQLRELVPEARVVVAHGQMSEQVLEQTVQGFWNREYDVMVCTTIV
ETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDKTLTETSYDRLA
TIAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVSEAVETFKGLMS
GKPIDATDKGPKEIRVDLPVDAHIPETYINSERLRLEVYRKLAEARDDDALTAAADDMID
RFGTLPIEVERLMAVARLRNQARAVGVSEILTQGTRIKLHPVELPDSKQVRLKRLYPGAN
FRAAAKALQVPMPKEGGAKRALNAPNLRDMELLQWVADFMTDVLDAPKIAVAGPGAEEAP
KKKVFSVSE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaccccgcccgtgcttggtgggctgctcacccaggcgttgacggacccg
aagttgaagggtttggtgacgcatgtgggggaagattcgctgcatattaccggcattgac
caggcacgttcctggactgctggtgcgatcgcgcgtgagaccccggtgctgttggtgacg
gcgacggggcacgaggcggaagacctcgcggcggagctcaaggcaatgcttggcgacgac
aaggtcgcccaattccccgcctacgagacgttgccccatgagcgcttgtcgccagctgcg
gacattgttggccgccgtgcgaaggtgctgtgggatatgccgcgggtgatcgtggctgcg
gcgcgcgccgtgtgccagccggttttgcctgcgattgagccgattcgggtggcggtggac
caggaagccgactttgaggacctgacgcagcagttggtgcatttcgcctacaaccacgtg
gatatggttgcgggccgtggcgagtttgctacccgcggcggcatcattgacgttttcccg
actactgcccagaaccctgtgcgtatcgagttctggggcgacgaagtcaccgacatccgc
tcctttgcggttgcggatcagcgcaccatcgaagaggttggtgccgtcgaactgtttcca
gcaaggcagttgcttatcgacgacaccgtggccgccaaagccgacgacctggcccgcaaa
ttcccgtcgaaccccaccttgtcgtcgctgcttgcacgcatttccgaaaagcagccggcg
gacggcatggaagcgatcatcccggcgctgaccgataagacgtattcggtgctgccggaa
ttgatgccggccggttcggtggtgttggtgaccaacccggagaaggttcgcactcgcatt
gccgacttggaagcgaccgaccgcgagttcctcgaggccggctgggaggccgccgcgatg
ggcgccgaaggcccggtggcggtggaaggcctggacgtttctgcttcgtcgtatcgctcg
ttcgagtccctggaggtctccgcgtcgaaggctggaaacgcctggtggacatttgctcct
cccggaatgtttgctgcggatgatgcagagacgctgccgctcgagttcgaggcagcaccc
gcgccgaagggtgatccgaaggagattgagcagctctacgccacgctgaaactgcacgtg
acgcaaaatcacggcaaggctgcctatgtcgccccggccaagggtgcgatcgaccgcatg
gctgagcgcctgcgcgagcacggcgtgtccgcacgagtggccacaccggggctcgagccc
gtcgatggcgcagttacgctctaccaggcgttatcgcacgcaggcctcgttttcggcggg
ccgaacttggtcgttgttactgaaacggacctgaccggcaaccgcgtcggcgacatcgcc
ggcgctaagcgacgcgccccgcgccgccgcaaccgcgtcgacccgttggctttgcagccg
ggtgatttcgtggtgcatgacacccacggcatcggcaagtttgtaaagatggcggagcgc
actatcaaggccggcgatgaggcgtcgcgacgcgaatacatcgtgctcgagtaccagccc
gccaagcgcggacagcccggcgaccaactctgggtgcccatggagtcgctggacctgctg
agtaagtacaccggtggcgagaagccgtcgctaagcaagatgggcggctcggactggaag
tccaccaagcgcaaggcgcgcgccgccgtgcgcgagatcgccggcgagttggtggagctc
tacgccaagcgccaagccgcgccgggccacgcgttcgcgccggataccccctggcagctc
gagatggaagatgccttcccgttcgtagagacggaagaccagctcaacgccatcgaagcg
gtcaaggaagacatggaaaagcccacgccgatggaccgcgtgatcgtgggcgatgtgggc
ttcggcaaaaccgaggtggccgtgcgtgccgcgtttaaggcagtgcaggacggtaaacag
gtcgcggtgctggtgccgacgacgctgcttgcccagcagcattactccaccttcacgcag
cgcatggatggttttggggtggaggttcgcgagctgtcgcgtttcacctctaccgcggat
tcgaagaagatcctcgcaggtcttgcggatggttccgtagacatcgtcattggtacccac
cgactgctgcagactggcgtgcagtggaagaacctcggtctgatcatcgtggacgaggag
cagcgcttcggcgtcgagcacaaggaacacatcaaggcgctgaagtcgcacgttgacgtg
ctcaccatgacggcaacgccgattccgcgcacgcttgagatgtcgctgaccggcatccgc
gaaatgacatcgattaccaccgcgccggaagaccggcacccggtgctcacgtatgtcggt
ccgcaagaggataagcaggtggcggcggcgattcgtcgagaattgcttcgcgacggccaa
gtcttctacatccacaacaaagtctccgacatcgaaaaaactgcccgccaactgcgcgaa
ctcgttcccgaggcccgcgtcgttgtcgcccacggccagatgagcgagcaggtgctcgag
cagaccgtgcagggtttttggaaccgcgaatacgacgtcatggtgtgcaccacgatcgtg
gagaccggcctggacatcgccaacgccaacaccctgatcgtggaaaacgcccagaacatg
ggcctgagccagttgcaccagctgcgcggacgtgtgggccgttcccgcgagcgtgcctac
gcgtacttcctgtacccgaaggacaagacactcaccgagacctcctacgaccgcctggcc
accatcgcccaaaacaacgacctgggcgccggcatggccgtggcgcagaaggacctggag
atgcgcggcgccggcaacgtgctcggcgcggaacagtccggccacatcgccggcgtgggc
ttcgatatgtacgtccgcttggtcagcgaggccgtggaaaccttcaagggcctcatgagc
ggcaaacccatcgacgccaccgacaaaggcccgaaggaaatccgcgtcgatctgcccgtg
gatgcacacattccggagacctacatcaactccgagcgcttgcgcctcgaggtgtaccgc
aagctcgcagaagcgcgtgacgacgacgccctgaccgcagcagccgacgacatgatcgac
cgcttcggcaccttgccaattgaggtcgagcggctcatggccgtagcccgattgcgcaac
caggcccgtgcagttggcgtttccgagatcttgacccagggaacgcgcatcaaactccac
ccagtcgagttgcctgactctaagcaggtgcgcctgaagcgcttgtacccgggggcgaac
ttccgggctgcggcaaaggcgctgcaggtgccgatgcccaaggaaggcggggcaaagcgg
gcactcaacgctccaaacctgcgcgatatggaattgctgcagtgggtcgccgacttcatg
accgacgtcctcgacgctcccaagatcgccgtggcgggaccgggtgcggaggaggcaccg
aagaagaaggtgttctcggtcagcgagtag
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