Chondrus crispus (carragheen): CHC_T00002254001
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Entry
CHC_T00002254001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K17943
pumilio RNA-binding family
Organism
ccp
Chondrus crispus (carragheen)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PUF
CPL
Motif
Other DBs
NCBI-GeneID:
17321012
NCBI-ProteinID:
XP_005713264
UniProt:
R7Q7W3
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All DBs
AA seq
1141 aa
AA seq
DB search
MQNNPPHPPPSSQSSSQNPLRHHDSPFPPLDPFRYPSNGNSSLVRSESAPINILEENSHP
SSHHISDLSNLSISARQPSPLDSDHPRSSHHHPMNFAAAAANSIQSAHTASAHSLAPFAN
RGHQQKQKHHVPTNKPPPARSLSSVELAAIVNGVSTPGVTAVPAHMSANPNATVLSASAS
AAKAAGQKKIPSNAPSNSGKPSSLGNSAPAWHKTVFDMIQEDFPKTPSNMFSSPLPPPGL
SGIQDGGQHVEHRPSGHERRARLPSTASLDIDLDRITAADLASDHGTARPADEGMRTQDL
PPRIHHRRSASINWPADLSGLRSNMSRSSSRSNVAASPPSGVYFPSKPSDIPPMSSPLSS
VVTGSGSISTGLLPAAVAASGSSSSAQSTSPTGSVRKHNVGVSSPQGSPATHLTGRSGTN
VSHVSNSTHSQMNPYSLPSTGHNANTSLSSIDDLNVPGLGNYDLFYEPSEAAALGLTPSQ
SSVFQTPTYPSSQRNMAFASGLENSHAQSLGGSSQYANVFPGMGLYPSPFSTNPSGVESG
TGVSPGYTESFRDGLAAADNLKNMSIQMAAFLSAQQQFYAAQMARMAAITGTSAFTGSPT
PYGAGAVPGGHVGHTSNAPHMRSPWDARDPTAPVYRGYPRSKHHFDQYRGGPNAGPHLSN
QKKNTGLDLGHKNRGPHGRRRNRGHEDVFLGVHKSGERVGYGNGGLSGSMQDSSHTRSAL
LEEFRATSLSIGRGIGSVGDVSLSGGFGAGSVGSSLHSGREWQLSEIKENVVEFATDQHG
SRFIQQKLESASPEDRDAILRQALTEAQRLMTDVFGNYVVQKLLDHGGANAVKLIAAELE
GRMLVLSLHMYGCRVVQKALEVLEPGARSVLVRELDGHVLKCIRDQNGNHVIQKCVELVE
PESVQFIVDSVHGQAVQLAGHSYGCRVVQRILEHGAPSQKAPIMVEIMSCITDLIKDQYG
NYVIQHVVEHGTREERSIIMNLVRGEVCDLSQHKFASNVVERCLQHGSLDERQILIEILI
MGEGDPNSSPLNHLVRDQFGNYVVQRVLDVARPPQRERVVTILRAQVPAIKKYSYGKHII
ARLEEHQSNSGSTSYHHGQGHSHNGASHGSLHRERHVSPAMMPAGVSHGLPSGPNDYIYY
G
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacaacccccctcatccccctccttcctcccaatcttcttcccaaaatcctctc
cgtcaccacgactctccgtttccgcccctcgaccccttccgctacccctccaatggcaac
tcgtccctggtcaggagtgagagtgctcccattaatattctagaggaaaactctcaccct
tcctcccaccacatctcggatctctccaatctctcaatttcggctcgtcaaccgtctcca
ttggattctgatcacccccgctcgtcgcatcatcacccgatgaattttgctgcagccgcg
gctaactccattcagtctgcgcataccgcatctgcgcactctctcgctccgtttgccaat
cgcggtcaccagcaaaagcagaagcaccacgtacctacgaacaaacccccgccggcaagg
tccctgtcttccgttgagttggctgccattgtcaacggtgtttctaccccgggagttact
gccgttccagcacacatgtcggccaatccaaacgctactgttttgtcggcttctgcctcc
gcagccaaagctgctggacagaagaagatcccatcaaatgctccttccaattcaggaaag
ccttcaagtctgggcaattctgcccccgcttggcacaaaaccgttttcgacatgatccag
gaggactttccgaagaccccgtccaacatgttttcttctcctcttcctcctcccggccta
tctggaattcaagatggcggccaacatgtagaacacaggccctctggccatgagcgaaga
gctcgtctcccgtctacggcttcattggacatagatttggaccgcatcaccgccgcggat
ttggcaagtgatcatggaaccgcgcgcccagctgacgagggaatgaggacacaagatctg
ccgccaagaatccatcatcgtcgatcggcttcgattaattggcctgctgatctctctggg
ttgcgttcaaacatgtcgaggagttcttctcgttccaacgttgcggcttctcctcccagc
ggtgtgtactttccaagcaagccttcggacattcctcccatgtcttcaccgctttcgtca
gtggtcacaggatcaggtagcatctctacggggctactcccggctgcagtcgctgcttca
ggttcgtcgtcatcggcgcagtctacgtccccgacgggttctgttcgaaagcataacgtg
ggggtgtcttccccgcaagggtcacctgctacccacctgacaggacgttcagggacaaat
gtgtcccatgtttcaaacagcacacattcccagatgaacccgtattctctaccctcaact
ggacacaacgcaaatacttcgctcagcagtatcgacgacctcaatgttccaggcctcgga
aactatgacttgttttacgagccgtctgaagcagcggcactaggcctgacgccatctcag
tcgtcagtatttcagactccgacatatccgtcgtcgcagaggaatatggcatttgcttct
ggtctcgagaattctcatgcgcagtcacttgggggtagttcccagtacgctaacgtcttc
cccggtatgggactttatccttccccgttttccacgaatccctcaggggtggaatctggc
accggggtgtcgcctggatataccgaatcatttcgtgatggtttagccgcagcagacaac
ttgaagaacatgagcatccagatggcggcctttcttagtgcccagcagcagttttacgct
gcgcagatggcgcgtatggcggccattacagggacatctgcatttaccgggagtcctacg
ccgtacggagctggtgcggtccctggaggacatgtaggccacaccagcaatgcgccacat
atgagatcgccatgggacgcgcgtgatcccactgcccccgtgtatcgtggttatccacga
tcgaagcatcattttgatcaataccgcggtggccccaatgccggtcctcaccttagcaat
cagaagaagaacacagggcttgacctgggacataaaaaccggggccctcacggaaggcgt
aggaaccgtggacatgaggacgtttttctcggtgtgcataagtctggcgagcgtgtcggg
tatggaaacggtgggcttagtggcagtatgcaagattcttctcataccagatccgctctt
cttgaagagttcagagcgacgtctttatctatcggacgtggaattggctcggtcggagat
gtcagtctgagtggcggatttggtgcgggcagtgttggatccagtcttcacagcggaaga
gaatggcagttgtctgagatcaaagaaaacgttgtggagtttgctacagatcaacatggt
tcacgcttcattcaacagaagcttgaatctgcatctcccgaggacagggacgccatattg
cggcaagccctaactgaggcacagcgactcatgacagatgtattcggaaactacgttgtc
cagaaacttctcgatcatggaggtgcgaatgctgtgaaactcattgccgcagaattggag
gggcgcatgctcgtgctctctctgcacatgtatggctgtcgggttgtgcaaaaagctctg
gaagttcttgagcctggagcgcgctctgtcttggtcagggagcttgatgggcatgtactg
aagtgcattcgggatcagaacggcaaccacgtcatccaaaaatgtgtggagttggtcgaa
ccggaatctgttcagttcatcgtagactctgtccacgggcaagctgttcagttggccggt
cattcctacggctgccgtgtagttcaaaggatcttggaacatggggctcccagtcagaag
gcacccatcatggttgaaatcatgtcttgcataacagacttgatcaaagatcagtacggc
aactacgtcatccagcatgttgtggaacacgggactcgagaagagcgttccatcatcatg
aatctcgtgcgtggggaggtctgtgatctttcccaacacaaatttgcctctaacgtcgtt
gaacgttgcctccagcatggatcattggacgaacgtcagattctgattgaaattcttatc
atgggggaaggagacccaaactcttcccctctcaaccatcttgttcgagatcagttcggg
aactatgtggttcagcgcgtattagacgtcgccaggcccccccaaagagaaagagtggtg
actattttgcgggctcaagtgcccgctatcaaaaaatactcttacggcaagcatatcatc
gctcgcctagaggagcatcagagtaactctggatcgactagttatcatcacggtcagggt
cactcgcacaatggagcaagccacggaagcctgcatcgggaacgtcatgtgagcccagcg
atgatgccggcaggggtttcacacggtttgccctctggccctaatgattacatctactac
gggtag
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