Chondrus crispus (carragheen): CHC_T00002554001
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Entry
CHC_T00002554001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHC_T00002554001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00002554001
Enzymes [BR:
ccp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHC_T00002554001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CHC_T00002554001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
LIG3_BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
17321288
NCBI-ProteinID:
XP_005713571
UniProt:
R7Q5C6
LinkDB
All DBs
AA seq
1082 aa
AA seq
DB search
MGESLHAEAPQNSKAPRDECNVNALPFSVITTLFRDLRKAKVPAKRRTGGLHVKSDRFGK
KAILTNAWLKIGEKCGVGEDVLARRNANDHFIPAQLLPPAESFKILSLLVPGLDSEHAYL
GMKETKLADAFVKALDLLPNGDDAQWLKHHKEKEYRPQRWKQDADIVDGNFATVLRAVLD
ERCPKESLLTVGIVWRALDTMSKASRVRSRRIQRAFPRQNEMMNETTMTDRTTDDDESMS
KPEDGKVVALRTLVQCGTSDEVAEVARIILKDVDIRLSEDMFLSWFHPGAKQHYTQIHDI
HQLLKDCSDPHFEIGDASVQVGQYASVMLCMRPSRKKLNVICENLRGAGEPAEPETQKEL
ETRTTSDLSQEARQYFIMEPKLDGERLQLHKRSTHSDDGTGVQEVRTFSRRGNESSAMYA
GAMREVILAGVQAENIILDGEIMIWDNLRSSWLRFEDTREVATSIAKRNVPEGSSYTLKY
MVFDVLYVDQGQRKHSEARRSGNMVIRLPLHKRRILLEKLVTKREASYGIGATACIEVVD
MELGYNERDLTQALQRYETLGYEGVIAKNPDMPYALAERSLDLAIKLKPDYFDGGIQDLD
VLILGAKYSSSRGHRKQRAGRLSSFLIGVRANDGTPPWKGRGGEWEQRMQKCKWVPVGSV
GTGYSDSELEQMQNMLSGEWKTFNAKDLPEHFEGRDYAPSLLSDVVKWIEPWKSIVLTVR
AFEVNRRYFALRFPRVERINWDKPYFDVPSFSHLLDLDENKLPATIRPDESDIDDISEYT
GGKKPRRLFDAEEEEAVKRVKLEGHVITGGRNPRSVIASAVGADVTQVDRVSTAFEGLTF
FVIASNPKLKEEVELQIHRLGGKFVQNFGSSVDFVICTSIHVSRVKILKERFSNIREKED
TCSIVHSNWVEECLSTKTRTLPSLNDVVYANRTLESELFEKADRFGDSWKEETSITELVH
SLDEVSKWTAKQPEVGNGDDVLEGVRERVKRAMKRCGNVFHGLTVLVPDTEVEVHGSVAL
LSAFGGRVVSEKEVDGDCTHVLVHSSLVPTWQKLHGSTKGAVITEEWVREKVKGTSQLAD
PG
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagtcactccacgcagaagctccgcagaactcaaaagctcccagagatgaatgc
aatgtaaatgcgctacccttctcggttataacgacgctgttccgtgacttgcgtaaggca
aaagtacctgcgaaaaggcgaacgggaggcctgcatgtaaagagtgatcgctttggcaaa
aaagcaattctcacgaacgcttggctgaagattggtgagaaatgtggcgttggtgaagac
gtgctcgcgaggcgaaacgcaaatgatcacttcattccagcacagctacttccgccggca
gaaagcttcaaaattcttagcttgcttgtcccagggttggactctgagcatgcgtatctc
ggaatgaaagagacgaaactagctgatgcgtttgtcaaagcccttgatcttctaccaaat
ggtgatgatgcccaatggctcaaacaccacaaggagaaagaatatcgtccacagcgatgg
aagcaggacgctgatatagtcgacggtaattttgccacagtcctgcgagctgtcttagat
gagagatgccccaaggaaagtttgcttacggttgggatagtttggagagcccttgatacg
atgagcaaggcatctcgagtgcgctcgaggagaatacaacgtgcattccctcgacaaaac
gaaatgatgaatgaaacaaccatgactgaccgtactacagatgatgacgaatccatgtcg
aaaccggaagatgggaaagtggtggccttgagaaccctcgtgcagtgtggaacatcagat
gaggtagctgaagttgctcgtatcatattgaaagatgttgacattcggctttctgaagac
atgttcttgtcttggtttcatcccggggccaaacagcactacacgcaaattcatgacata
caccaacttttgaaagattgctcggatcctcattttgagattggagatgcctctgtgcag
gttggccagtacgcgagcgtgatgctctgcatgcgtccttcacgaaaaaagcttaatgtt
atttgtgaaaatcttcgaggagcgggagaaccggctgaaccagagacgcaaaaagaattg
gaaacccgaacaacaagcgatttgtcgcaggaagcccggcaatactttatcatggaacca
aagctagatggagaaaggctgcaactgcataagaggagtacgcattcagacgatgggact
ggcgtgcaagaggtccgcacattttccagaagaggaaatgaaagcagtgcgatgtatgct
ggtgcgatgcgagaagtcatccttgccggcgtacaggctgaaaatatcattctcgacgga
gaaatcatgatatgggacaacctcagatcttcgtggttgagatttgaagatacccgagaa
gtcgccacgtcaattgcgaaacgcaacgtaccggaaggatcatcatatacgttgaagtac
atggttttcgatgtgctctatgtcgatcaagggcaaaggaaacacagtgaagcacgacgc
agtgggaacatggtcattcgcttgcctttgcataagcgacgaatactgctggaaaaactg
gtcactaagagagaggcttcatacggcatcggggcgacagcgtgcatagaggtcgttgac
atggagctaggttataacgagcgggacctgacacaggctcttcagcgatacgagacattg
gggtatgagggtgttattgcgaagaacccagatatgccgtatgctcttgcggaaaggagt
ctagaccttgcaatcaagcttaaacctgattacttcgacggcggcatccaggacctcgat
gtgctaatacttggtgcaaagtacagtagcagccgaggacatcgcaaacagagggcagga
cgattaagttcgtttttgatcggtgtaagagcaaacgatgggacaccaccatggaaagga
cgcggtggcgagtgggagcagcgaatgcagaagtgcaaatgggtaccagtgggaagcgtt
gggactggctactcggattctgagcttgagcagatgcaaaatatgttgagtggagaatgg
aaaactttcaatgcaaaagacttgcctgaacacttcgagggcagggattatgcaccgtcg
ttgttgtctgatgtcgtaaaatggattgagccgtggaagtctatcgtgctgacggtgcgg
gcgtttgaggtcaaccggagatactttgctttacgatttccgcgggtcgaacgcatcaac
tgggataaaccatattttgacgtcccaagcttctctcatcttcttgacctagatgaaaac
aagcttcccgcaacaattcgcccagacgagtcggatatcgatgacatttcggaatacaca
ggcggtaagaagcccagaagactgtttgacgccgaggaggaggaagctgtaaaacgcgtt
aaacttgaagggcatgtcatcacaggaggccgaaatccgcggtccgtcattgcatccgca
gtcggagcggacgtgacgcaggttgatcgagtctctacagcgttcgaggggcttacattt
tttgttatcgcctcaaacccgaaactaaaggaagaagtagagctacaaattcaccggctt
ggaggcaaatttgtacagaacttcggaagctcagtggattttgtcatatgcacgagtatt
cacgtatccagagtgaaaatactcaaagaacggttctccaacatacgggaaaaggaagac
acttgttctattgttcatagcaactgggttgaagaatgtctatctacaaagacccgtacg
ctacctagtttgaacgatgtcgtatatgcgaacaggacgcttgagtcggaactgttcgag
aaagcggaccggttcggtgattcatggaaagaagaaacctctattacggaactggtacat
tctctcgatgaagtatctaaatggacagcgaagcagcctgaagttgggaatggtgatgat
gttctcgaaggcgtgagggagagagtgaaacgagcaatgaaaaggtgtggtaatgtgttc
catgggttaacagtattagttcctgacacggaagtagaagtacatggttccgtggcgctg
ctgtcggcttttggcgggcgagtcgtgagcgagaaggaagtcgatggcgactgcacacac
gtgctggttcactcttcgctggtacccacctggcagaagttacacggctcgacgaaaggt
gcagtaataactgaagagtgggttcgagaaaaggttaagggcactagccaactagctgat
ccgggatga
DBGET
integrated database retrieval system
