Chondrus crispus (carragheen): CHC_T00002736001
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Entry
CHC_T00002736001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00002736001
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00002736001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00002736001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CHC_T00002736001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CHC_T00002736001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
17321599
NCBI-ProteinID:
XP_005713884
UniProt:
R7Q9C1
LinkDB
All DBs
AA seq
789 aa
AA seq
DB search
MSAFEELGVMPELIEALDDMSWHLPTPVQTESVPLILGGGDVAVAAETGSGKTGAFCLPV
AQVVYETRNTNLSKSTLSETAPTAEEQAGPIKLSEVDRGKHVAVADGFLAQCRDRAFWQG
VRATRGVASGKWYFIGRPRDDGICRMGWSSVHAQLNLGTDQKGFGYGGTGMRSHGGSFDA
YGKPYTTGDQVCCMVEFQLCEDIERSRVLISFALNEKELGEAFDVSWKELGLDNMSLIPT
LAMKNAELEILLQERSTTAEKHGFKHISGATLADAVISEEAQALFDEYAEEDQDGDQEMR
EVESEKAGEKGKAPLALILEPSRELAGQVENELTKIGKQLPDRAVRHLLLIGGGSQKTEL
AMLKRGVDIVTGTLGSIVKHVKKRTLSLDSIRFFVIDEADTFATDNLRDILFLHEKVPTK
NRVQTLLFSATLHSPEIRALSDKIQSFPTWVDLKGKEAVPETLHHTMVRIDADADTAMLD
ECPDGLEWPLDEVHIFEDKGRAKNKKARAESNAGIADGVDAADLRSQTVKKLKLIALKKV
IDANAMSQAMIFVRTQRDADNVESFLIQCSGVSASDVASRRFRGRHDSGPEVEYSCSVLH
GGRRQEERNQALAAFKASEVRFLVCTDVAARGIDIVGLPFLVNVTLPDKSENYIHRVGRA
GRAERLGLAVSLVAAQKEAVWFHTCKKTKGKGVCNNRKLVTARGCVMWYNEGKLLGEIEE
RLKGRIEELGPDLRRKNVDAGPVMYGSKIGEMDVSSETAKRVERLQPAVRKLVRMEEEAQ
AMFFALQGR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccttcgaagaactcggcgtaatgccggagctaattgaagctctggacgacatg
agctggcatttaccgaccccggtccaaaccgaatccgtgccgctaatcctgggcggtgga
gacgtagccgttgccgcagagacgggctctggaaagacaggcgccttctgtttaccagtt
gcccaagtcgtctacgagacacgcaacacaaacctatccaagtccaccctgagcgagaca
gcccctaccgcagaggagcaggccggtccaattaaattgtctgaggttgaccgagggaag
cacgtcgccgtcgctgatggatttttggcccagtgtcgagatcgcgccttttggcaaggc
gtgcgcgctactcgtggggtagcgagcggaaagtggtactttatcgggagacctcgcgat
gatggtatctgtcgtatgggatggagctcagtgcacgcccagctgaatttgggcacggat
caaaagggttttggctatggcggcaccggtatgagatcgcatggtggctcatttgacgca
tacggcaagccgtacacaacgggggaccaagtctgttgcatggttgaatttcagctttgt
gaggacatcgagcgttcaagagtcctcatttcgttcgcgctgaatgagaaggagcttggc
gaagcgttcgatgtatcgtggaaggagctcggtctcgacaacatgagcctcattccaaca
cttgccatgaagaatgccgaattggaaatccttttgcaagaacgctcaaccacagctgaa
aagcatgggttcaagcatatatcgggtgccacccttgccgatgcagtgatctcggaggaa
gcccaagctttgtttgacgaatacgcagaagaggaccaagacggggaccaggaaatgcgt
gaggtggaaagcgagaaggctggcgagaaaggaaaggctcctttggccttaattttggag
ccctccagagaacttgcagggcaagtagagaatgagctaaccaagatcgggaagcagttg
cctgacagagctgttcgtcacctgctgctcatcggaggggggagtcagaaaacagaactg
gccatgttgaaacgaggtgttgacattgtcaccggtacccttggatcgatcgtgaagcac
gtgaagaagcgcactctctcgctggatagtatccgcttcttcgtcatagatgaagcggat
acgtttgcaacagacaatcttagggacattctgtttctccatgaaaaagtgccgaccaag
aaccgcgtccagactttgctgttttctgctacactgcactctcccgaaatacgggcgttg
tcggacaagatccagtcgttcccgacgtgggtggatttgaagggcaaagaagcagttccc
gaaacactccatcacaccatggttcgcatagacgccgatgcggacaccgccatgcttgac
gaatgtcctgatggcctcgagtggccccttgacgaagtccatattttcgaggacaagggc
cgagctaagaacaagaaggcgcgagccgagtcgaacgccggcatcgccgacggtgtagac
gccgcggatctgcgatcgcaaaccgtcaaaaagctcaagctcatcgctctgaagaaggtg
atcgacgcaaacgcgatgagccaggcgatgattttcgtgcgcacgcagagagacgcagac
aacgttgagtcgtttctaattcagtgctcgggcgtctcggcgagcgacgtggcctcgaga
aggtttcgaggccgccacgactccgggccggaggtggaatactcatgttcagtgttacat
ggcgggcgcagacaagaggagcgtaaccaggcgctggccgccttcaaggcatcagaggtg
cgctttctcgtgtgtacggacgtggctgcgagggggattgacatcgtcggcctgccgttc
ctagtcaatgtgacgctgccggacaagtctgaaaactacattcaccgggtggggcgcgcg
ggaagggcagaacggctggggcttgcagtttcattggtggcggcgcaaaaggaggctgtg
tggtttcacacgtgcaagaagacaaagggaaaaggggtgtgcaacaacaggaagcttgtg
acagcgcgcggatgtgtgatgtggtacaacgagggcaagctgctgggggagatcgaggag
cggctcaaaggacggatcgaggaacttggaccggacttaaggcgaaaaaacgtggatgcg
ggacccgtgatgtacgggtcgaagattggagagatggacgtaagttcggagacggcgaag
cgggtggagcgactgcagccggccgtgcgcaaactggtgcggatggaagaggaggcgcag
gcgatgttcttcgcgctgcaggggaggtag
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