Chondrus crispus (carragheen): CHC_T00010038001
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Entry
CHC_T00010038001 CDS
T02916
Name
(RefSeq) RNA recognition motif-containing protein
KO
K14407
cleavage stimulation factor subunit 2
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHC_T00010038001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010038001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CHC_T00010038001
U7-dependent histone pre-mRNA processing factors
CHC_T00010038001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
DNA_ligase_IV
RRM_7
DUF4154
Peptidase_M16_C
Motif
Other DBs
NCBI-GeneID:
17322948
NCBI-ProteinID:
XP_005715232
UniProt:
R7QCA3
LinkDB
All DBs
AA seq
270 aa
AA seq
DB search
MGRPPGTTVFVGNISYDTTEDQLKEVFSEVGNVVSFRLMYDHDTGRAKGFGFCEYEDKET
AMSARRNLNGTQLNGRPLRVDLTDSDKQAAAANGLSLAPDPHAKSPAPPSKAPANPAIPA
PLASANPSMAAMTPAEIHAAMLHLKKAVLQNRADLRDLLLANPRLAHAILHGQIMLGMVP
PPMLPPQPPQPPRPHAPNVALPPPARAPPPARATSIAWEXXXXXXXXXXXXXXXXXXXXX
XXXXXXXGCHRARAWAPVQGGRLADLGSRP
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgcccccccggcaccaccgtcttcgtcggcaacatctcctatgacaccaccgaa
gaccagctcaaggaggtcttctccgaagtcggcaacgtcgtctccttccgcctcatgtac
gaccacgacaccggccgcgccaagggcttcggcttctgcgagtacgaagacaaagagacc
gccatgtctgcccgccgcaacctaaacggcacgcagctcaacggccgcccgctgcgcgtc
gacctaaccgactcggacaagcaagccgccgccgcaaacggcctctccctcgccccggac
ccccacgccaaatcccccgccccgccgtccaaggcccccgcgaacccagccatcccggcc
ccgctcgcctccgccaacccgtccatggccgccatgacccccgccgagatccacgccgcc
atgctccacctcaagaaggccgtcctgcagaaccgcgccgacctgcgcgacctgctgctc
gccaacccgcgcctggcccacgccatcctgcacggtcagatcatgctgggcatggtccct
cccccgatgctgccgccgcagccgccgcagccgccgcgtccgcacgccccgaacgtcgcg
ctgccgccgcccgcgcgtgccccgccgcccgcgcgcgccacgtcgattgcatgggagcnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnncggatgccaccgcgcccgggcatgggccccggtgcagggg
ggccgcctggcggacctgggcagccgcccatga
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