Caulobacter vibrioides CB15: CC_1934
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Entry
CC_1934 CDS
T00049
Name
(GenBank) metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ccr
Caulobacter vibrioides CB15
Pathway
ccr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC_1934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccr03019
]
CC_1934
Messenger RNA biogenesis [BR:
ccr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CC_1934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
ISG65-75
Motif
Other DBs
NCBI-ProteinID:
AAK23909
UniProt:
Q9A6Z2
LinkDB
All DBs
Position
complement(2132122..2133801)
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AA seq
559 aa
AA seq
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MKKSKNDEFVFLPLGGSNEIGMNFNLYGFGPAHDRKWIVVDLGVTFGDQTTPGVEIILPD
PSYIEPYADDILGIVLTHAHEDHLGAVHWLWPRLKAPVFATPFTAFLLREKLRDADLLGE
VEITEVPLGGSFKLGPFELELITLTHSIPEPNGLAIKTPLGTVLHTGDWKIDPDPQLGAP
TDEAAIRRLGDEGVLAMVCDSTNVFQEGSAGSEADVRTALGDLIKSLNGKIAVACFASNV
ARMDTVIRAAQACGRKVSLAGRSMHRMAAAARSVGLLEGLEPFINDDQAKHLPENEVLYL
CTGSQGEARAALSRIADGSHPHVKMGSGDHVIFSSRVIPGNEIPIRNLQNKLADRGVRLH
TERDTPGIHVSGHPCRDELRQMYAWVRPHIAVPTHGERRHLIEHAALAKDLQVPHAVSPR
NGDMVLLAPGQPGIIDEVPAGRLYVDGGVVTPENGEALRERRHAAFNGVLAVSIVLDGRN
KIVSGPQIRGIGLTGDDEYTLDDALDDLCEEAESAYKKLDGDAREIDETIESAISRAVKK
AAFRIWERKPVVETTVLRI
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtccaagaacgacgagttcgtcttcctgccgctgggcgggtcgaacgagatc
ggcatgaatttcaacctgtatggctttgggccggcgcacgatcgcaagtggatcgtggtc
gatctgggcgtgacgtttggcgaccagacgaccccgggcgtcgagatcatcctgcccgac
ccgagctatatcgagccctatgccgacgatattcttggcatcgtgctgacccacgcgcac
gaggatcacctgggcgccgtgcactggctgtggccgcgtctgaaggcgccggtgttcgct
acgccgttcaccgccttcctgctgcgcgagaagctgcgcgacgccgatctgctgggcgag
gtggagatcaccgaggtgcctctgggcggtagcttcaagcttggtccgttcgagctggaa
ctgatcaccctgacccattcgatcccggagccgaacggcctggcgatcaaaacgcctctg
ggcaccgttctgcacaccggcgactggaagattgaccctgacccgcagcttggcgcgccg
acggacgaggcggctatccgccgtctcggtgacgaaggcgtgctggccatggtgtgcgac
agcaccaacgttttccaggaaggctctgccggttccgaggccgacgtccgcacggccctt
ggcgacctgatcaagagcctgaacggcaagatcgccgtggcctgtttcgcctccaacgtt
gcgcgcatggacaccgtcatccgcgcggcccaggcttgcggccgcaaggtcagcctcgct
ggccggtcaatgcatcgcatggcggcggccgcccgctctgtcggtctgttggaaggcctc
gagcccttcatcaacgacgaccaggccaagcatctgccggagaacgaggtcctctatctc
tgcactggcagccagggcgaggcgcgcgccgccctgtcgcgcatcgccgacggcagccat
ccgcatgtgaagatgggctcgggcgatcatgtgatcttcagttcgcgcgtgatcccgggc
aacgaaatcccgatccgcaacctgcagaacaagctggccgaccgcggcgttcggctgcac
accgaacgcgacacgccgggtatccacgtgtcgggtcacccgtgccgggatgagctgcgc
cagatgtacgcctgggtgcggccgcatatcgccgtgcccacgcacggcgaacgtcgtcac
ctgatcgagcatgcggccctggccaaggatcttcaggtcccgcacgccgtcagcccgcgc
aacggcgacatggtgctgctggcgcccggccagccaggcatcatcgacgaggtgcccgcc
ggccgtctctatgtggacggtggggtggtcacgcccgagaacggcgaagcgctgcgtgag
cgtcgccatgccgccttcaacggggtgctggcggtgtcgatcgtgctcgacggtcgcaac
aagatcgtctccggaccccagatccggggtatcggcctgacgggcgatgacgagtacacg
ctggacgatgctctggacgatctctgcgaggaggccgagagcgcctacaagaagctggac
ggcgacgcgcgcgagattgacgagacgatcgaaagcgcgatctcccgcgccgtgaagaag
gcggcttttcgcatctgggagcgcaagcccgtcgtagaaaccacggttcttcgcatttga
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