Colias croceus (clouded yellow): 123690892 Help Entry 123690892         CDS       T08651                                  Name (RefSeq) DNA ligase 4-like isoform X1   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism ccrc  Colias croceus (clouded yellow) Pathway ccrc03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:ccrc00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     123690892  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ccrc03400]     123690892 Enzymes [BR:ccrc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      123690892 DNA repair and recombination proteins [BR:ccrc03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      123690892 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N TPR_14 DNA_ligase_A_C RNA_ligase BRCT TPR_19 TPR_8 DNA_ligase_IV TPR_1 BRCT_2 TPR_2 TPR_6 TPR_16 BTAD TPR_12 TPR_MalT LIG3_BRCT ANAPC3 Motif Other DBs NCBI-GeneID:  123690892 NCBI-ProteinID:  XP_045490971 EnsemblRapid:  ENSCEUG00000004532 LinkDB All DBs Position 1:complement(4509488..4523316) Genome browser AA seq 1532 aa AA seqDB search MDEEAANQMGAKIELDTELTNKFLNGEMSFAEYSSEWYDCEDEDEVDDAEKKTEEPQQTA KRRRRVTRLTPALVGLMGEANLRFARGEIEMAEKMCHEIIKQLPTASEPYQTLAQIYEHD SEKALQFSLLAAHLSRTDVNEWLRLAAISKQKGNHKQEMICYTQAIKADPQNIDIHMQRL DLISKIEEMKLTLSAWFISRVKCYHKIVTCLAPSHGEIIMKHARLAASLYHDANEKSKAY EVMQTAYKKCPTLFTLEDLNIYLELLISQKEFQKCLEVFVASVGVDIEAEIETIRNSSNE IEEHTNYTKCSIPSDLAIDLKCKLLVCFIHLGAINLVKTFLDDFLTNDVEKAGDLYMDIE EAFSAVGHHEMAMQLLEPLVKAPNFDLGAVWLKYAECLLNLGREDEAVNAFYKVLEHAPQ HPDARRKLFSILEKKGCIDEALNVLQQDYKYVVSPSLLYEHCTILKRYNRIPKYLEVAEA LLCRTLTKFNHEEELKIACRARGGVELIHEFRTLRGESAYHENDLQFEDETFKLSPKQEW DLFNELLSIACDLKQYSTMQRLTYSAMLIKGLSSHKREIEFYIFQASLLNKNYVHAMRFI REFAQRNTSNRTWNLLSLVINSLEDTTQSKFLTRLFHKEPHWVREHFKMEKTPANDILFR ELCTLLEQLSKRKKHRQDQDKMLSNFINDFRINSGKVTDKKNSSFFPVLRLLLPDRDRER SPYNLKETKLGSLLVKVLSLNKQSHDAQELLNFRSVHNSAHDSDFAGVAYFVLKNRMTQK SCSLTIGDINKVLDRISSAEVGNKGPVLDDAFSFIIKNLTAEQLKWFLRIILKDLKLAIG THRTLAAFHPDAPELLDSCGNLSKVCEDLADGDTRPIELGVKVFYAVSPMLSERLDITRI SQLSSDKTYQIEDKFDGERFQIHMEDDVFEYFSRKGFAYSSNYGKTYDSGLLTPHLKDCF SPDVKSCILDGEMMGWHKEYRCFGSKGMAFDIKKITENSKFRPCFCAFDVLYYNGKSLIG PPDKGGKTLKERQKILDSMFVNLQGVILRSKRQIMRETVDVLNALNKAIENQDEGIVVKD VDSYYIANRRNAGWYKIKPEYTEGAMTDLDLVVIGADEAENKRQGRAKSFHVACLDNTGP AKRWVAVGRVATGLTFDEREKLCALLEQKWTIAKRTPPPSCLFFNKDKPDFWILPEYSVV LEVRATELVRSSSSGTDYTLRFPRVMKVRSDKPVNDVLTLEEFQRLVAEKNAVIKLSTKR ISEDQIDAVLSKTRRTRTSKAIQVSDKFRTKQTGDVHVTSSALRDREVCVLSGDGGGEGG RGELVRIVEMHGGKHVVNPGPKTWCSVAGTLSFRIRKLIESNKFDIITASWLRNLAISEF PCSLSPLDMLSIKKETKVALSLEFDPYGDSYKEPIDEDTLKKCLTKMDNEDPIYPTTQEM VQLDQQLFGENNPFSFLRQCSIHFMNDPIRSALAKIYGARICDKSDFLTHIVISKETDRQ ELHRINNNGDVKIVSEEWFDKCLEMKKLVPVS NT seq 4599 nt NT seq  +upstreamnt  +downstreamnt atggatgaagaagcagcaaatcaaatgggggccaaaatagaattagacacagaactaaca aataaatttttaaatggtgaaatgtctttcgctgaatattctagtgagtggtacgattgt gaagatgaagatgaagttgatgatgcagagaaaaaaacagaagagccgcaacagactgca aaaagacgtcgcagagtcacccgcttgaccccagctttggttggattaatgggtgaggcc aatttaagatttgctagaggagaaattgaaatggcagaaaagatgtgtcatgaaataatt aaacaattaccaacagcttcggagccctaccaaactctggcacaaatatatgaacatgat tctgagaaggctttacagttttctctcttagctgctcacttatctcgaactgatgttaat gagtggttaagattagctgcaatctcaaaacaaaagggtaaccacaaacaagagatgatc tgctatactcaagctatcaaagcagatccacagaatattgatatccacatgcaaaggctt gatctaataagcaagattgaagagatgaagcttacattaagtgcttggtttatctcaaga gtgaaatgttatcataaaattgtgacatgccttgccccaagtcatggtgaaataataatg aaacatgcaaggctagctgcctctttatatcatgatgcaaatgaaaagagtaaggcatat gaagttatgcaaactgcatacaaaaagtgtcccaccctgtttaccctagaagatcttaat atttatttggaattattaatatcacagaaggaatttcaaaaatgtctagaagtatttgtg gcaagtgttggtgtggacattgaagcagaaatagagacaattcgaaattcctcaaatgaa attgaagaacacactaattacactaagtgttcaataccaagtgatttagcaatagatctt aagtgtaaactgttggtttgttttattcatttaggtgcaataaatcttgttaagacattt ttggatgattttttgactaatgacgttgaaaaagccggagatttgtatatggacattgaa gaagcattttctgctgttggtcatcatgaaatggctatgcaactattggaacctctcgta aaagctcccaatttcgatcttggagcagtgtggctcaaatatgcagaatgccttcttaat ttagggagggaagatgaagcagttaatgctttttacaaagttttagaacatgcaccacaa catcctgatgctcgtcggaaactcttttccatactagaaaagaaaggttgtatagacgaa gctttaaatgttcttcaacaagactataaatatgttgtaagtcccagtctcttatatgaa cattgtactatacttaaaagatataataggatacccaaatatttggaagttgcagaagct ttgttatgtagaactttaacaaaatttaatcatgaagaagagttgaaaatagcttgcagg gcaagaggtggagttgaacttattcatgaatttcggacattaagaggagaaagtgcctat catgaaaatgatttgcaatttgaggatgaaaccttcaaacttagtcctaaacaggagtgg gatttgtttaatgagttgctctccattgcttgtgatttaaaacaatactcaactatgcaa agactaacatatagtgctatgcttataaaaggcttatcatctcataaaagagaaatagaa ttctatatattccaagcgagtcttcttaataaaaactatgttcatgcaatgagatttata cgagaatttgctcaaagaaatacttcaaatagaacatggaatttattgagcctagttata aactccctagaggacaccacccagagcaagttcctgacgaggcttttccacaaagaacca cattgggtaagggagcattttaagatggagaaaacgccagcaaatgatatcctcttccgt gagctttgtacactcttagaacaattgagcaaaaggaagaaacatagacaagatcaagat aaaatgttgtctaattttattaatgattttagaattaattctggaaaagttactgataaa aagaattcctcattcttccctgttttgcggctgcttctaccagatagagaccgtgaaagg agtccttataatttgaaggagacaaagcttgggtctctgttagttaaggtcctatcgctg aataaacaatcacatgatgcccaagagctccttaactttcgatcagtgcataatagcgca catgacagcgatttcgccggtgtggcttatttcgtattaaagaacagaatgacacagaaa tcgtgcagcttaactataggagatattaataaggtgctagacagaatatcctctgctgaa gtcggaaataaaggccctgtcctggatgacgctttcagctttattattaaaaacttaact gcagagcaactgaaatggtttctaaggattattttgaaggatttaaaactcgctatagga acgcatagaaccttagctgcgtttcaccctgacgctcctgaactcctggatagctgcggg aatcttagcaaggtgtgtgaagacttagctgacggcgatacccgaccaatagagttaggt gtgaaggtattctacgcagtgagtcccatgctatcagagaggctggatataactcgtata tcccagctgtcgtcggataaaacctatcagatcgaagataagttcgacggtgaaaggttt cagattcatatggaggacgatgtatttgaatatttctcccgtaaaggtttcgcatattca agtaattatggaaaaacgtatgattcaggattactgacaccgcacttgaaggattgtttt tcgccggatgttaaaagttgcatactcgacggggaaatgatgggctggcataaggaatat cgatgttttggttccaaaggcatggctttcgacataaaaaaaatcacggagaactcgaaa tttcggccatgtttttgcgcctttgatgttctgtattacaatggtaagtcactgattggt ccgcctgataaaggcgggaaaacgttgaaggaaaggcaaaaaatattagactccatgttt gttaatcttcaaggagtcatattgcgtagtaaacggcagattatgagagaaaccgtcgat gttttgaatgctctgaataaggcgatagaaaaccaggacgaaggtattgttgtgaaggac gtcgactcatattatatagccaatcgacgaaacgcgggatggtataaaataaaaccagag tacacagagggcgcgatgacagatctggacttggtggtgatcggcgctgatgaagctgag aacaagaggcagggtcgggccaaaagcttccatgttgcctgtctggacaatacgggtcca gctaaacgctgggttgcagtcggtcgagttgcaacgggtctaacgttcgacgaaagggag aaactgtgcgcacttttggaacaaaaatggacgattgcaaagagaactccaccaccgtca tgcttgttcttcaataaggataagccggacttctggatcttgccagaatattcggttgtt ttggaagttcgagcaacagaattagtacgcagcagttcgtcgggaacggattatacgcta cgttttccgcgcgtcatgaaagtgcgtagcgacaaaccggtgaacgatgtgcttactttg gaggaatttcagcgacttgtagcggaaaaaaatgcagttataaaactcagtaccaagcgt ataagcgaagatcaaatagacgctgttctatccaaaacgcgacgtacgcgtacatcgaag gccatacaagttagcgacaagtttcgtacaaaacaaaccggcgatgtacacgttacatct agtgcgttacgggatagggaagtgtgtgtgctgtctggggatgggggtggggaggggggg aggggggagttggtgaggatcgtggagatgcatggtggcaaacatgtggtgaatcctggt ccgaaaacgtggtgtagcgttgcaggaacattaagttttcgtatccgaaagctgatagaa agtaacaaattcgatataataacagcatcatggctgcggaatcttgctatttctgaattt ccttgttctttatcgccattagacatgttgtcaattaaaaaggaaaccaaagttgcgttg agtttggaatttgacccttatggtgatagttataaggaaccgattgacgaagatacgttg aagaaatgcttgacgaaaatggataatgaggatcccatttaccccacgacacaagaaatg gtgcaactagaccaacaactgtttggcgaaaacaacccattctcatttctaagacaatgt tcaatacattttatgaacgatcccatacgttcagctctagcgaagatttatggagccaga atatgtgataaaagtgactttttaactcacattgtgatatcaaaggaaacggatagacaa gaattacatcgcattaataataatggcgacgttaaaatcgtgtctgaagagtggtttgat aaatgtttagaaatgaagaaattagtgccagtctcgtga

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