Colias croceus (clouded yellow): 123699044
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Entry
123699044 CDS
T08651
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03022
Basal transcription factors
ccrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123699044
09124 Replication and repair
03420 Nucleotide excision repair
123699044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrc03021
]
123699044
03400 DNA repair and recombination proteins [BR:
ccrc03400
]
123699044
Transcription machinery [BR:
ccrc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123699044
DNA repair and recombination proteins [BR:
ccrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123699044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
123699044
NCBI-ProteinID:
XP_045501857
EnsemblRapid:
ENSCEUG00000008663
LinkDB
All DBs
Position
17:complement(10129853..10140478)
Genome browser
AA seq
475 aa
AA seq
DB search
MSESSKSKSLNSNTTPTLQCKDLHEYLKSRSSQFLDTLYNYPTICLAVYRELPELARHFV
IRLLFVEQPVPQAVVASWVSQTHAKEQSKASEALSELSVWHEAPIPGGLPGWLLSQSFKK
NLKVALLGGGRPWSMSQTLEPDGKARDVAFLDAYALERWECVLHYMVGSQQTEGISADAV
RILLHAGLMTRDAEDGSAVITKAGFQFLLLSTAKQVWLFLQHYLHTAEKRNLSSAECLAF
LYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLALNITCVKDG
ITPLEAGRQQGYVVVESNYRVYGYTQSTLQVALLGLFTELMYRFPNLVVGVITRESVRQA
FRGGISAEQIIKYLEQHSHPQMLKTETGGIRTTSVLPPTVVDQVRLWESERNRFTYIDGV
VYNQFLSQADFVVLRDYAKQQGVLSWQNERTRTMVVTKPGHDDVKKFWKRYSKSS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtcctcaaaatcaaagtctcttaattcaaacaccactccaactttgcaatgc
aaagatctgcacgaatatcttaaaagtcgttcttcacaatttttggatacattatacaat
tatccaacaatttgtttagcagtatatagagagttaccagaattggctcgtcattttgtt
atacgtcttctgtttgtcgagcagccggtacctcaagctgtagtagcgtcttgggtttca
caaacacatgccaaagaacagagcaaagcaagtgaagctctgtcagaactctccgtgtgg
catgaggcaccaatacctggtggtctacctggctggttgctctcgcagtcttttaagaag
aatctaaaagtagctctgctaggaggcggtagaccatggagcatgtcacaaaccctcgag
ccggacggcaaagctcgagacgtagcgttcctggatgcgtacgcactggagcgctgggag
tgcgtgctgcactacatggtggggagccagcagactgagggcatcagcgctgatgctgtg
aggatcctgctgcacgccggtctgatgaccagagatgctgaagatggttctgcggtgatc
actaaagcaggttttcagttccttctacttagcacagctaaacaggtgtggcttttcctg
caacactatttgcacacggcggagaagagaaatttgagctcggctgaatgtttggcgttt
ttatatcagctcagttttagtactctgggaaaggattacagtacagaaggaatgagcaat
aatatgttagtatttctgcaacacttgagggaatttggacttgtatatcagagaaagcgc
aaagcgggtcgtttctacccaacccggcttgctctcaacataacttgcgtcaaagacggc
atcactccgctagaggcgggccggcaacagggctacgtggttgtcgagagcaactacagg
gtgtacgggtatacgcagagcaccctgcaagttgccctacttggattgttcacggaactt
atgtacaggttcccgaacctcgtggtcggcgtgataacccgcgagtcagtacggcaagcg
ttccgaggcggcatctcagcagaacagatcatcaaatacttggaacagcactcgcatcca
cagatgttaaaaacggaaacgggtgggataagaacaacgtcagtgcttccccccactgtg
gtggatcaagttaggttatgggagagcgagaggaacagattcacgtatatcgatggagtg
gtgtataaccaatttttgtcgcaggccgacttcgtagtactgcgtgattacgctaaacaa
cagggcgtgttgagttggcagaacgaacgaactcgaactatggtggtcactaagccggga
cacgatgatgtcaagaagttctggaaacgatactctaagagctcgtag
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