Caulobacter vibrioides NA1000: CCNA_02012
Help
Entry
CCNA_02012 CDS
T00841
Name
(RefSeq) metal-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCNA_02012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccs03019
]
CCNA_02012
Messenger RNA biogenesis [BR:
ccs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCNA_02012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
ISG65-75
Motif
Other DBs
NCBI-GeneID:
7333340
NCBI-ProteinID:
YP_002517385
UniProt:
A0A0H3C8R5
LinkDB
All DBs
Position
complement(2158098..2159777)
Genome browser
AA seq
559 aa
AA seq
DB search
MKKSKNDEFVFLPLGGSNEIGMNFNLYGFGPAHDRKWIVVDLGVTFGDQTTPGVEIILPD
PSYIEPYADDILGIVLTHAHEDHLGAVHWLWPRLKAPVFATPFTAFLLREKLRDADLLGE
VEITEVPLGGSFKLGPFELELITLTHSIPEPNGLAIKTPLGTVLHTGDWKIDPDPQLGAP
TDEAAIRRLGDEGVLAMVCDSTNVFQEGSAGSEADVRTALGDLIKSLNGKIAVACFASNV
ARMDTVIRAAQACGRKVSLAGRSMHRMAAAARSVGLLEGLEPFINDDQAKHLPENEVLYL
CTGSQGEARAALSRIADGSHPHVKMGSGDHVIFSSRVIPGNEIPIRNLQNKLADRGVRLH
TERDTPGIHVSGHPCRDELRQMYAWVRPHIAVPTHGERRHLIEHAALAKDLQVPHAVSPR
NGDMVLLAPGQPGIIDEVPAGRLYVDGGVVTPENGEALRERRHAAFNGVLAVSIVLDGRN
KIVSGPQIRGIGLTGDDEYTLDDALDDLCEEAESAYKKLDGDAREIDETIESAISRAVKK
AAFRIWERKPVVETTVLRI
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtccaagaacgacgagttcgtcttcctgccgctgggcgggtcgaacgagatc
ggcatgaatttcaacctgtatggctttgggccggcgcacgatcgcaagtggatcgtggtc
gatctgggcgtgacgtttggcgaccagacgaccccgggcgtcgagatcatcctgcccgac
ccgagctatatcgagccctatgccgacgatattcttggcatcgtgctgacccacgcgcac
gaggatcacctgggcgccgtgcactggctgtggccgcgtctgaaggcgccggtgttcgct
acgccgttcaccgccttcctgctgcgcgagaagctgcgcgacgccgatctgctgggcgag
gtggagatcaccgaggtgcctctgggcggtagcttcaagcttggtccgttcgagctggaa
ctgatcaccctgacccattcgatcccggagccgaacggcctggcgatcaaaacgcctctg
ggcaccgttctgcacaccggcgactggaagattgaccctgacccgcagcttggcgcgccg
acggacgaggcggctatccgccgtctcggtgacgaaggcgtgctggccatggtgtgcgac
agcaccaacgttttccaggaaggctctgccggttccgaggccgacgtccgcacggccctt
ggcgacctgatcaagagcctgaacggcaagatcgccgtggcctgtttcgcctccaacgtt
gcgcgcatggacaccgtcatccgcgcggcccaggcttgcggccgcaaggtcagcctcgct
ggccggtcaatgcatcgcatggcggcggccgcccgctctgtcggtctgttggaaggcctc
gagcccttcatcaacgacgaccaggccaagcatctgccggagaacgaggtcctctatctc
tgcactggcagccagggcgaggcgcgcgccgccctgtcgcgcatcgccgacggcagccat
ccgcatgtgaagatgggctcgggcgatcatgtgatcttcagttcgcgcgtgatcccgggc
aacgaaatcccgatccgcaacctgcagaacaagctggccgaccgcggcgttcggctgcac
accgaacgcgacacgccgggtatccacgtgtcgggtcacccgtgccgggatgagctgcgc
cagatgtacgcctgggtgcggccgcatatcgccgtgcccacgcacggcgaacgtcgtcac
ctgatcgagcatgcggccctggccaaggatcttcaggtcccgcacgccgtcagcccgcgc
aacggcgacatggtgctgctggcgcccggccagccaggcatcatcgacgaggtgcccgcc
ggccgtctctatgtggacggtggggtggtcacgcccgagaacggcgaagcgctgcgtgag
cgtcgccatgccgccttcaacggggtgctggcggtgtcgatcgtgctcgacggtcgcaac
aagatcgtctccggaccccagatccggggtatcggcctgacgggcgatgacgagtacacg
ctggacgatgctctggacgatctctgcgaggaggccgagagcgcctacaagaagctggac
ggcgacgcgcgcgagattgacgagacgatcgaaagcgcgatctcccgcgccgtgaagaag
gcggcttttcgcatctgggagcgcaagcccgtcgtagaaaccacggttcttcgcatttga
DBGET
integrated database retrieval system