KEGG   Caulobacter vibrioides NA1000: CCNA_02012
Entry
CCNA_02012        CDS       T00841                                 
Name
(RefSeq) metal-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ccs  Caulobacter vibrioides NA1000
Pathway
ccs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCNA_02012
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccs03019]
    CCNA_02012
Messenger RNA biogenesis [BR:ccs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CCNA_02012
SSDB
Motif
Pfam: RNase_J_C Lactamase_B_2 RMMBL Lactamase_B ISG65-75
Other DBs
NCBI-GeneID: 7333340
NCBI-ProteinID: YP_002517385
UniProt: A0A0H3C8R5
LinkDB
Position
complement(2158098..2159777)
AA seq 559 aa
MKKSKNDEFVFLPLGGSNEIGMNFNLYGFGPAHDRKWIVVDLGVTFGDQTTPGVEIILPD
PSYIEPYADDILGIVLTHAHEDHLGAVHWLWPRLKAPVFATPFTAFLLREKLRDADLLGE
VEITEVPLGGSFKLGPFELELITLTHSIPEPNGLAIKTPLGTVLHTGDWKIDPDPQLGAP
TDEAAIRRLGDEGVLAMVCDSTNVFQEGSAGSEADVRTALGDLIKSLNGKIAVACFASNV
ARMDTVIRAAQACGRKVSLAGRSMHRMAAAARSVGLLEGLEPFINDDQAKHLPENEVLYL
CTGSQGEARAALSRIADGSHPHVKMGSGDHVIFSSRVIPGNEIPIRNLQNKLADRGVRLH
TERDTPGIHVSGHPCRDELRQMYAWVRPHIAVPTHGERRHLIEHAALAKDLQVPHAVSPR
NGDMVLLAPGQPGIIDEVPAGRLYVDGGVVTPENGEALRERRHAAFNGVLAVSIVLDGRN
KIVSGPQIRGIGLTGDDEYTLDDALDDLCEEAESAYKKLDGDAREIDETIESAISRAVKK
AAFRIWERKPVVETTVLRI
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaaaaagtccaagaacgacgagttcgtcttcctgccgctgggcgggtcgaacgagatc
ggcatgaatttcaacctgtatggctttgggccggcgcacgatcgcaagtggatcgtggtc
gatctgggcgtgacgtttggcgaccagacgaccccgggcgtcgagatcatcctgcccgac
ccgagctatatcgagccctatgccgacgatattcttggcatcgtgctgacccacgcgcac
gaggatcacctgggcgccgtgcactggctgtggccgcgtctgaaggcgccggtgttcgct
acgccgttcaccgccttcctgctgcgcgagaagctgcgcgacgccgatctgctgggcgag
gtggagatcaccgaggtgcctctgggcggtagcttcaagcttggtccgttcgagctggaa
ctgatcaccctgacccattcgatcccggagccgaacggcctggcgatcaaaacgcctctg
ggcaccgttctgcacaccggcgactggaagattgaccctgacccgcagcttggcgcgccg
acggacgaggcggctatccgccgtctcggtgacgaaggcgtgctggccatggtgtgcgac
agcaccaacgttttccaggaaggctctgccggttccgaggccgacgtccgcacggccctt
ggcgacctgatcaagagcctgaacggcaagatcgccgtggcctgtttcgcctccaacgtt
gcgcgcatggacaccgtcatccgcgcggcccaggcttgcggccgcaaggtcagcctcgct
ggccggtcaatgcatcgcatggcggcggccgcccgctctgtcggtctgttggaaggcctc
gagcccttcatcaacgacgaccaggccaagcatctgccggagaacgaggtcctctatctc
tgcactggcagccagggcgaggcgcgcgccgccctgtcgcgcatcgccgacggcagccat
ccgcatgtgaagatgggctcgggcgatcatgtgatcttcagttcgcgcgtgatcccgggc
aacgaaatcccgatccgcaacctgcagaacaagctggccgaccgcggcgttcggctgcac
accgaacgcgacacgccgggtatccacgtgtcgggtcacccgtgccgggatgagctgcgc
cagatgtacgcctgggtgcggccgcatatcgccgtgcccacgcacggcgaacgtcgtcac
ctgatcgagcatgcggccctggccaaggatcttcaggtcccgcacgccgtcagcccgcgc
aacggcgacatggtgctgctggcgcccggccagccaggcatcatcgacgaggtgcccgcc
ggccgtctctatgtggacggtggggtggtcacgcccgagaacggcgaagcgctgcgtgag
cgtcgccatgccgccttcaacggggtgctggcggtgtcgatcgtgctcgacggtcgcaac
aagatcgtctccggaccccagatccggggtatcggcctgacgggcgatgacgagtacacg
ctggacgatgctctggacgatctctgcgaggaggccgagagcgcctacaagaagctggac
ggcgacgcgcgcgagattgacgagacgatcgaaagcgcgatctcccgcgccgtgaagaag
gcggcttttcgcatctgggagcgcaagcccgtcgtagaaaccacggttcttcgcatttga

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