Campylobacter cuniculorum: CCUN_1754
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Entry
CCUN_1754 CDS
T05046
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccun
Campylobacter cuniculorum
Pathway
ccun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCUN_1754 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccun03400
]
CCUN_1754 (mfd)
Enzymes [BR:
ccun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCUN_1754 (mfd)
DNA repair and recombination proteins [BR:
ccun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCUN_1754 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARJ57326
UniProt:
A0A1W6BZ13
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All DBs
Position
1750239..1753172
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AA seq
977 aa
AA seq
DB search
MQASFYEYLKHSNPCELILCEDDKEADLLSQISLFLGIKTFVLPDFRAEFGDDLRVFSKE
LFELCQVLNAYHKEKNQKILIAPLHTILKKLPGKKHLKNLVVSKQEKLILKDFKEELLRL
GYEFVDIVQDKGEISVRGDVVDIFCINEEQPLRILLFEEEIESIRFFDLNSQKSIPNELE
NFEICPFLAYFSEENYEDFKQKIENFQSEVLINDIHSLGFWCIDDFYDYLELDFRSIKEF
NLDTFARDLSFINQRIIPQAKIFKPLQSVYHKDFFAFHKDKKIIVLAQNEALFKQLELEN
MPNLIFKKSDLRINLSSANELIISLNQKEKLKNKRKTKLILDELKINDFIVHEDYGVGQF
LGLELISISGAKKEFVTLLYQNNDRLLLPVENLHLIDKYLGASGELPSLDRLGKTSFIKL
KERLKAKLLALASQIVIRAAKRALICPKKINIDFALQADFVAKAGFSYTQDQLKACEEIL
EDLSGSKVMDRLLSGDVGFGKTEVAMNAIFPVVKNGFCVFFFVPTTLLSHQHFKTLKKRF
EPFNIPVFKCDRFTNSKDKKNLLENLKAQKPCIVVGTHALLSMECENLALVIIDEEHKFG
VKQKEKLKELSYNAHILSMSATPIPRSLNQALSSIKSYSTLQTPPEDRLDVRTFVKENNE
ILLKELIARELRRGGQIFYIHNHILSIEQCKKHLLELFKDLRILILHSKIDSKTQEEQML
KFENKEYDMLLSTSIIESGIDLPNANTIVVERADRFGMADLHQLRGRVGRSNKQGYCYFF
IENKQKITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLENELNQLTQKEPLEENKIDLKLNINAFLNSELIAEDRLRLELYRRLSQCKKVSEVY
EIEGEIEDRFGKLDTYTQQFLALINIKILAHKKYKSISNYEQNIQFTNFHNQKEIIKAKS
KDDDDIITAVLTHLRKV
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattctatgagtatttaaaacattcaaatccctgtgagttaatactttgc
gaagatgataaagaggcggatttgctctcgcaaatctctctttttttaggtataaaaact
ttcgttttgcctgattttcgtgcagaatttggagatgatttaagggttttttctaaagag
ctttttgagctttgtcaagttttaaatgcttatcataaggaaaaaaatcaaaaaattttg
attgcacccttacacaccatacttaaaaaattacccggaaagaaacatttaaaaaattta
gtcgtaagcaaacaagaaaaattgattttaaaggattttaaagaagagcttttaaggctt
ggttatgaatttgtggatattgtgcaagataaaggcgaaatttctgttcgtggcgatgtt
gtcgatattttttgtatcaatgaagaacaacctttgagaattttgctttttgaagaagag
attgaaagcataagattttttgatttaaattctcaaaaatccatcccaaatgagcttgaa
aattttgaaatttgtccctttttagcttattttagtgaagaaaattatgaagattttaag
caaaaaatcgagaattttcagagtgaagttttgattaatgatattcattctttaggtttt
tggtgcattgatgatttttatgattatttggagcttgattttaggagcattaaagaattt
aatttggacacattcgcaagggatttgagttttatcaatcaaagaatcattcctcaagca
aagattttcaaacccttacaaagcgtttatcataaggatttttttgcatttcataaagat
aaaaaaatcatagttttagctcaaaatgaagccctttttaaacagcttgaacttgaaaat
atgccaaatttgatttttaaaaagagcgatttgaggattaatttaagctctgcaaatgag
cttatcatctctttaaaccaaaaagaaaagctaaaaaacaaacgcaagacaaaactcatt
ttagatgaattaaaaatcaacgattttattgtccatgaagattatggagtgggtcaattt
ttagggcttgaactcatcagtatcagtggagctaagaaagaatttgtaacgcttttgtat
caaaataacgacagacttttattgcccgttgaaaatttgcatttgattgataaatattta
ggagctagtggggaacttccttcgcttgatcgtttaggaaaaacaagttttatcaaactc
aaagaaaggcttaaggctaaacttttagcacttgcttcgcagattgtgattagagctgca
aaaagggctttgatttgccctaaaaaaatcaatatagactttgccttgcaagcagatttt
gttgcaaaggctggattttcttatactcaagatcaactcaaagcttgtgaagaaatttta
gaagatttatctggttctaaggttatggatagacttttaagtggtgatgtgggttttgga
aaaactgaagtggcgatgaatgctatttttccggtggttaaaaatggtttttgtgtattt
tttttcgtgccgacaacacttttatcccatcagcattttaagactttgaaaaaacgtttc
gagccttttaatatccctgtttttaaatgcgatcgctttacaaattcaaaagataaaaaa
aatcttttagaaaatttaaaggctcaaaaaccttgcattgttgtaggaactcacgcactt
ttaagtatggagtgtgaaaatttagcccttgtgattattgatgaggagcataaatttgga
gtgaaacaaaaagaaaaacttaaagaactctcttataatgcccatattctttcaatgtct
gccacgccgattccaagaagtttaaatcaagccctaagctcaatcaaatcttacagcact
ctacaaaccccacccgaagacaggcttgatgtaagaacctttgtcaaagaaaacaatgaa
attttactcaaagaactcattgcaagagagcttagaagaggggggcaaattttttatatt
cacaatcatatcttaagcattgagcaatgtaaaaaacatttgctagagctttttaaggac
ttaagaattctcatcttgcattctaagattgattctaaaactcaagaagagcagatgctt
aaatttgaaaataaagaatacgatatgctccttagcacttctatcatcgagagcgggatt
gatttacctaatgctaataccatagttgttgaaagagccgatcgctttggaatggctgat
ttgcatcagcttaggggcagggttggtcggagcaataaacagggatattgttattttttt
attgaaaacaagcaaaagattacaaaagatgctcttaaaaggctggtttctttagaaagc
aattcttttttaggtgcggggagcattttggcttatcatgatcttgaaattagaggaggc
gggaatttattaggtgttgatcaaagcggacatatagagcaaattggttatagtctttat
cttaaaatgcttgaaaatgaactcaatcaactcacacaaaaagaacctttagaagaaaat
aagattgatttaaaacttaatatcaacgcttttttaaacagcgaactcattgcagaagat
cgcttaagacttgagctttatagaagacttagtcagtgtaaaaaagtgagtgaggtttat
gaaatcgaaggcgaaattgaagatcgctttggaaaacttgatacttatacgcaacaattt
ttagcccttataaacattaaaattttagcccataaaaaatacaagagcattagcaattac
gaacaaaacatacaatttacaaattttcacaatcaaaaagaaatcatcaaagcaaaaagc
aaggacgatgatgatattatcactgcagttttaactcatttaagaaaggtttaa
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