Corvus cornix (hooded crow): 104690311
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Entry
104690311 CDS
T03546
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104690311 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccw03021
]
104690311 (PCF11)
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104690311 (PCF11)
Transcription machinery [BR:
ccw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104690311 (PCF11)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104690311 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104690311
NCBI-ProteinID:
XP_039418710
LinkDB
All DBs
Position
1:complement(34704284..34725925)
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQH
GSSSIASVPAPSKQHISPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSASVTSQSETKANKTAQVEKQNSTRSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPASKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPEDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEAFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGAGASQFDGPMAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPM
GPHGPSSGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPAGPGGQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGSNQVSLMSAQPGPY
GQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQA
NETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPEDTPPA
CAEESTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcttcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgttact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcac
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatttctcccacacct
catatgacagtaaagccacctcatcagactgctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtaaacagggatcctcggcttaataggatg
ggccaacattcttctcatactaaggatcaatctcataggaaagaattttcagcaagtgta
accagtcagtctgagaccaaggcgaacaaaacagcacaggttgaaaaacagaactcaaca
aggtcagaaaaatcaaaagcaagtgaaaaaacccagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcctgatactaaagatagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggaagaggaggtcaaagaaaagaggagaagt
acagagaagaaggaaaaggaggagcataagacatgtgaacatagaccagtggggagcaga
aataaagtgattaatggtgctgttcagaaacaagacacgactacagaggagtcagaaaaa
cagggtggaaaacaaggaagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcaagatcaccatctacacattctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtttatctcctacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagctagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggagaac
gcagaaaactggcaaggatccaaatcaggcaagagatggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacac
cgggaaaactggcctgctagtaaaggaattttatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaggatgagttc
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttaaaaaagaaacctcttctgtcg
gatgcagaattaacatattatgaacataaagctaaactaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcccgaggatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcaggcaaaagccaagcgtggggtacagtttgac
agaaaagaagcatttgcagaaagatcaaggagacattctcctgtaagtggcactacaaga
ccttttgccgaaaacctgtcaccacttgagagtcgacgaagacttgaagaccagcgtgct
actaaaggagcaagaggttctgatccttacgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaggggaaaagtacagcagagttccagaaaatagatggagatgca
ctctgtaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccattcagtgaacgtttcaaaagagccaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagaggata
agcgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcaagg
gttggagtagatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtgggggca
ggtgcatctcagtttgatggaccaatggcaggagcagggggagctggagccctaagattt
gatgggccaccagggcagctggcaggggccctgaggtttgaaggacctccaggccaggtt
ggtggaggaggtccactacggtttgagggacctcttgggcctttgcggtttgaggggcct
gcggggcagcctgtaggtggtcctagatttgaaggacctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccattg
gggccccatggacaacctggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccgtcaagtggtgggctcaggtttgaggggccacacggaccatcaggt
ggtgggctgagattggaaggaccacgtggtcagccaggtctaggtcctaggctaattgat
ggaccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccgagatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctc
ctgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggccaacag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagct
tctaggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccttttgttgaacatcct
ggccagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgat
ggttcacctggaccaaatttcaatgggccagctggcccaggaggacagaacttcccactg
agagcagctggacattactttgaagaaaaaggtcttcagggtcctcagtatggaaatttc
agtaatatgccaatgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttat
ggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagcc
cttccccattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgct
aaactgctgaaaacagggatcctcaaattgtctaaaactgattccacttcagcacaagca
aatgaaacatcagcccagccgactgctgaagaagaagatgatgatcagaatgaagatcag
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcgactgtacactggaattcagtgttactcctgtggaatgaggttcactacttca
cagacagatgtctatgcagatcatttagattggcattaccgccagaaccggacagaaaaa
gatgttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcac
gaagaggttgtgttgaagacacaggaagctgcgaaagagaaggagtttcagagtgtccca
gctggaccagctggagcggttgagagctgcgaaatttgccaagaacaatttgaacagtat
tgggatgaggaagaggaagagtggcacctgaagaatgctatcagggtagatgaaaagatt
taccatccatcttgttatgaagattaccaaaatacatcatcattcgattgcacaccgtct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgaggacacacctccagcc
tgtgcagaagagagcacacctgcatctacagaaatcaaaacagaacctgaggagtctgtt
taa
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integrated database retrieval system
