Corvus cornix (hooded crow): 104692971
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Entry
104692971 CDS
T03546
Symbol
USP47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X3
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccw01002
]
104692971 (USP47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccw04121
]
104692971 (USP47)
Enzymes [BR:
ccw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104692971 (USP47)
Peptidases and inhibitors [BR:
ccw01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104692971 (USP47)
Ubiquitin system [BR:
ccw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104692971 (USP47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
ubiquitin
Sad1_UNC
Motif
Other DBs
NCBI-GeneID:
104692971
NCBI-ProteinID:
XP_019144959
LinkDB
All DBs
Position
5:complement(53708250..53759928)
Genome browser
AA seq
1352 aa
AA seq
DB search
MKKKFSQAESAAEEPRVLCIIQDTTNSKTVNERITLNLPASTPLKRLFEDVASKVGYVNG
SFDLMWGNGDNVTDTQTPIDQNSDKTILDAGFEPGKKNFLHLTDKDGEQPHVMPEESGTT
DDSAQERFIGPLPREGSIGCTNDYVSQSYSYSSVLSKSETGYVGLVNQAMTCYLNSLLQT
LFMTPEFRNALYKWEFEESEEDPERSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSS
EAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVRCLECGYEGWRIDTYL
DIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYL
LTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSVFIDVEDEKSPQTESCTDSGAENEGSC
HSDQMSNDFSNDDGVDEGICLESNSAAERISKAGSEKSSLLYELFSVMVHSGSAAGGHYY
ACIKSFSDDQWYSFNDQHVSKITQEDIKKTYGGSSGSRGYYSSAFASSTNAYMLIYRLKD
PTRNAKFLEAHEYPEHIKQLVQKERELEEQEKRQREIERNTCKIKLFCMHPTKQIMMENK
LEVHKDRTLKEAVEIAYKLMDLEEAVPLDCCRLVKYDEFHDYLERSYEGEEDTPMGLLLG
GVKSTYMFDLLLETRRPDQIFQCYKPGEVMVKVHVVDLKTESVAPPISVRAYLNQTVSEF
KQLISKATHLPAETMRVVLERCYNDLRLLNVSSKTLKAEGFFRSNKVFIESSESLDRHVT
YTDSQLWKLLDRHANTIRVYVSLPEQAPASQLRRALYQKSSGGAGNLDEPCERVKGPVGN
MKSVEAILEESTEKLKSLSLQQQQQQEGDNGDSSKSTEASDFENIESPLNEIDSSASAEN
RELENQIQISDPENLQSEERSDSDVNNDRSTSSVDSDILSSSHSSDTLCNVDNAPLPLAN
GLDSHSITSSRRSKANQGKKETWDTAEEDSGTDSEYDESGKSRGEAQYMYFKSEPYTAEE
GSGEGQKWLMVHVDKRITLSAFKQHLEPFVGVPSSHFKVFRVYASNQEFESVRLNETLSS
FSDDNKITIRLGRALKKGEYRVKVYQLLVNEPEPCKFLLDAVFAKGMTVRQSKEELLPQL
REQCGLDLTIDRFRLRKKTWKNPGTVFLDYHIYEEDINISSNWEVFLEILDGVEKMKSMS
QLAVLSRRWRPSEMKLDSFQEVVLESSSVEELKEKLSEISGIPLENIEFAKGRGTFPCDI
SILEIHQDLDWNPKVSTLNVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRL
QKTGHRVTYSPRKEKALKIYLDGAPNKDLTQD
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaattttcacaggcagagagtgctgctgaggagcccagggtgctgtgtata
atacaggacaccacgaattccaagacagtgaatgagcgtattaccttgaacctgccggct
tccaccccacttaaacggctctttgaagacgtggcttccaaagtgggctacgtgaatgga
tcttttgatttgatgtggggcaatggagataatgtcactgacacgcagactccaatagat
cagaacagtgacaaaaccattcttgatgctggttttgagccagggaagaagaactttctg
catctgacagacaaggatggagagcagcctcatgtaatgccggaggagtcaggtacaaca
gatgacagtgcacaggagagattcataggcccccttccaagagaaggctctattggatgt
accaatgactatgtcagtcaaagctactcttattcttcagtcctgagcaaatcagagaca
ggttatgtggggctggtaaatcaagcaatgacttgctacttgaacagccttctgcaaaca
cttttcatgactcctgaatttagaaatgcattgtataagtgggaatttgaagaatctgaa
gaggatcctgagaggagtatcccctaccagcttcaaaggctgtttgttttactgcagacc
agcaaaaaaagggcaattgaaacaacagatgtcacacggagttttggatgggatagtagt
gaagcatggcagcagcatgatgtacaggagctttgtagagtcatgtttgatgctttggag
cagaaatggaagcaaacggagcaggctgatcttataaatcaactgtatcaaggcaaactg
aaggactatgtgagatgtctagagtgtggctatgaaggctggagaatcgacacttacctg
gatatccctttggtcatccggccctatggctccagccaggcgtttgctagcgtggaagaa
gcactgcatgcttttattcagcctgagatccttgatggcccaaatcagtacttttgtgag
cgatgtaagaagaaatgtgatgcaaggaagggtctgcggttcttgcattttccatacctg
ctgacattacagctgaagagatttgactttgattataccactatgcacagaattaaactc
aatgatcgcatgacttttccagaggagctggacatgagtgtctttattgatgttgaagat
gagaagtctcctcagactgagagttgcactgatagtggagctgaaaatgaaggcagttgt
cacagtgaccagatgagcaatgatttttctaatgatgatggagttgatgaaggaatctgc
cttgaaagcaacagtgcagcagagaggatctctaaagctggcagtgaaaagagttcttta
ctgtatgagctcttttctgtcatggttcattctggaagtgctgctggtggccattattat
gcctgtataaaatcttttagtgatgatcagtggtacagctttaatgatcagcatgttagc
aagataactcaggaagatattaagaaaacatatggaggatcttctggaagcagaggctat
tattccagtgcttttgctagctccacaaatgcttacatgctgatatatagactgaaagat
ccaacaagaaatgcaaagtttcttgaggcacatgaatatccggagcacattaaacaattg
gtacagaaagaaagagaattagaagaacaagaaaagaggcaacgtgaaattgaacgcaac
acgtgcaagattaaattattctgcatgcatcctacaaagcaaataatgatggagaacaaa
ttggaagtccataaggacagaacactgaaggaagctgtggaaatagcttacaagttaatg
gatttggaagaggctgttcccttggactgctgtcgccttgtcaaatacgatgagtttcat
gactacttggagcgctcctacgaaggagaggaggatactccaatgggtttgttacttgga
ggggtcaagtcaacgtacatgtttgatttactgttggaaacaagaaggcctgaccaaatt
ttccagtgctataagcctggtgaggtcatggtaaaggttcatgtagtcgacctgaagact
gaatctgttgctcctccaataagtgtgcgagcttatttgaatcaaacagtttcagagttt
aaacagctaatttcaaaggccacgcacctgcctgctgaaaccatgcgggtcgtgttggaa
cggtgctacaatgacctgcgtcttctgaacgtctccagcaaaacactgaaagctgaaggc
ttttttagaagcaacaaggtatttattgaaagctcagagtctttagaccgtcacgtgaca
tacacagactctcagttgtggaagcttttggatcgccatgcaaacacaatcagagtgtat
gtttcattgccagagcaagctcctgcatctcagcttagacgagcgctttatcagaagtct
agtggaggtgcaggcaacttggatgaaccttgtgagagagtaaaaggacctgtaggtaat
atgaaatctgtagaggcaattttggaagaaagcactgaaaaacttaaaagcttgtccctg
cagcaacagcagcagcaggagggagataatggagacagcagcaaaagcacagaagccagt
gattttgaaaacattgagtcacctttaaatgaaatagactcttcagcatcggcagaaaac
agagaacttgaaaaccaaattcagatttctgatccagaaaatctgcagtccgaggagcgg
tcagactcagatgtcaataacgacaggagtacgagctcagtggacagtgacatcctcagc
tccagccacagcagtgacactttgtgcaacgtggacaatgcccccctccccctggctaat
ggacttgactctcacagcatcacaagtagtaggagatcaaaagccaatcaggggaagaag
gaaacctgggacacagcagaagaagattctggaacagacagtgaatatgatgagagtggc
aagagcagaggagaagcacagtatatgtactttaaatcagaaccctacactgcagaggag
ggttcaggagaagggcaaaaatggctgatggtgcatgttgataaaagaattacactgtct
gccttcaagcaacacttggagccttttgttggagttccatcttctcacttcaaagtcttt
agagtctatgccagcaatcaagagtttgagagcgttcggctgaatgagaccctttcgtca
ttttctgatgacaataagataactattagacttggaagagcccttaagaagggtgaatac
agagtcaaagtctatcagcttttggtaaatgagcctgagccatgcaagtttcttctagat
gcagtttttgctaaaggaatgactgtccgacagtccaaagaggagctgcttcctcagctt
cgagaacaatgtggcctagacttgacaattgacaggtttcgcctacgaaagaaaacatgg
aagaatccaggcactgtgtttctggattatcatatctatgaagaagatatcaatatttcc
agcaattgggaggtcttcttagaaatactcgatggagtagaaaagatgaaatccatgtca
caacttgctgttttatcgagacgatggaggccgtcagaaatgaaattagattctttccag
gaagtcgtactagaaagcagcagtgtcgaagaattaaaagagaagctaagtgaaataagt
ggaatacccttggaaaacatagaatttgcaaagggtagaggaacctttccatgtgacatt
tccatactagagattcatcaagacttggactggaatccaaaagtatctacattgaatgtc
tggcctctgtacatttgtgatgatggtgcagtaatattttatagggataaaactgaagaa
ttaatggaattaacagatgagcaaagaaatgaactgatgaaaaaagaaagcagcagactc
cagaaaactggacaccgggtaacctactctccccgtaaagaaaaagcactaaaaatttat
ctggatggagcaccaaataaagatttgactcaagactga
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integrated database retrieval system
