Corvus cornix (hooded crow): 120412037
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Entry
120412037 CDS
T03546
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
ccw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120412037 (UPF3B)
03015 mRNA surveillance pathway
120412037 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
120412037 (UPF3B)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120412037 (UPF3B)
mRNA cycle factors
P-body specific factors
120412037 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120412037
NCBI-ProteinID:
XP_039428086
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All DBs
Position
4A:complement(9612610..9619578)
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AA seq
482 aa
AA seq
DB search
MKEDKENARPKERRGASAGPGVLLAAGSGTGPAAGTDGRAGAAELDRLERPKDKKETLSK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKL
EKETLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFDRDREYERAQREKL
RRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSMDKSEKVTKDD
KKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPPDQGVDKKQEGETSHTKE
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggcctccgccgggccg
ggggttctgctggccgcagggtcgggcacgggccccgccgccggcacggacggcagagcc
ggtgccgccgagctcgatcgcctggagcggcccaaggacaagaaggagacgctcagcaag
gtggtgatccgccggctgccgcccagcctgacgaaggagcagctggaggagcacctgcag
cctctgcccgagcacgactacttcgagttcttcgcgaacgactccagcttatacccgcac
atgttctcgagagcctacatcaacttcaagaaccaggaagacatagtcctcttcagggat
cgcttcgacggctatgtttttgtcgatcacaaaggtcaggaatatgctgccatagttgag
tttgcacctttccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactgga
actatcgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaactaacctccactcctgaaactttgttggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctctattgaacttcttgaaaaataaacagagactgagagaa
gaaaaaagagaggagagaaggaggagagaattagaaagaaaaagacaaagagaagaagaa
agaagaaaatggaaggaggaggagagaaggaagagaaaagaagcagaaaaactgaagaaa
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaactg
gaaaaagagactctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgacagagacagagaatatgagagagcacagagagagaaactg
agacgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggttttt
agaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcatggacaaatctgagaaagtaaccaaagatgat
aaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcag
ctgtaccagcccggagcccgaagccggagcagattgtgtcagtatgaagacagtgctgca
aagcccccagatcagggagtggataagaaacaagagggtgagaccagtcacacgaaagaa
gaggagtga
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