Corynebacterium cyclohexanicum: SCMU_13250
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Entry
SCMU_13250 CDS
T07918
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccyc
Corynebacterium cyclohexanicum
Pathway
ccyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCMU_13250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccyc03400
]
SCMU_13250 (mfd)
Enzymes [BR:
ccyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCMU_13250 (mfd)
DNA repair and recombination proteins [BR:
ccyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCMU_13250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BCT75483
LinkDB
All DBs
Position
1424028..1427723
Genome browser
AA seq
1231 aa
AA seq
DB search
MSVDVARPASREAAPILDGLRRAVGQDPSVARLIEYASKPAARRSQDLQIVAPTGLRPVV
IAEVLDALPEPAGVVLAVTATEREAEDLVDSLGAYVPGGSVALFPSWETLPHERLSPRSD
TVGRRLAVLRRLAHPAAAAPYNGGSPLRVVVAPVRAVLQPLVAGLGDLEPVSLAVGQEAP
FDEVVRALADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPVRVEFFGDEVEQMRWFAV
ADQRSLSGPNVHHPTVLFAPPCRELLITPAVMSRAAKLKGALPAAADMLEKIAGGIAVEG
MESLAPLLVDRMVPFIGELPEGSVSLTVEPEKVRARAHDLAATNEEFLAAAWATASDGGS
APLDVSLAQVSGTEGVAAERAGRLEDASFATLGEVRADAQSRGVSWWSLTSLGVDAETVA
DVDVVTIAAREPRGYQGDVAEMMEFIGSRVREQWRIVVATDGAGPAQRLAELFHDAGIPC
ARIDGLDRLPEPGIIEITKAPAGKGFVLDGLTLGLLTEADLLGRASAAGTRDMRKMPSRR
RNAVDPLSLHAGDFVVHEQHGIGKFVELIQRNTGPRGAETVREYLVLEYAPAKRGAPGDR
LFVPTDQLDQITRYVGGDTPSLSKMGGADWASTKSKAKKAVKEIAGELIRLYSARMASKG
HSFGPDTPWQRELEEAFPYVETPDQLTTINEVKADMEREVPMDRLVSGDVGYGKTEIAVR
AAFKAVQDGKQVAVLVPTTLLAQQHFETFSERFSGFPVRVRALSRFQTAAEAKETIEGLK
TGSVDVVIGTHRLLSKEVQFKDLGLVIIDEEQRFGVEHKEELKKMRTNVDVLAMSATPIP
RTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQVSAAIRRELMREGQVFFVHNRVS
SIEKQAAAIRELVPEARVEVAHGQMSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNA
NTLIIDRADQYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLGEVALERLKAVAAHNELG
AGMQLAMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEGEEKVAEMKIE
LPVNAHLPHDYVPGERLRLEAYRKLAAATDDAGIAEVMEELTDRYGEPPAPVENLASVAR
FRVRARAAGLTDVALQGNMVRFAPADLPESKQMRLTRMYKGAQYKPALNAVLIPKPKTAP
VGGRDLADGEILAWADQVVEAIFAPAPAPTP
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgttgacgtcgcgcgtccggcgagccgtgaggccgcgcccatcctcgacgggctc
cgccgcgccgtcggccaggaccccagcgtcgcccggctgatcgagtacgcctccaagccg
gccgcccggcgcagccaggacctccagatcgtcgcgcccacgggcctgcgtcccgtggtg
atcgcggaggtgctcgacgcgctgccggaaccggccggcgtcgtgctcgccgtgacggcc
accgagcgggaggcggaggacctcgtcgactccctcggcgcgtacgtgccgggcggatct
gtggcgctgttcccgagctgggagacgctcccgcacgagcgcctctcgccccgctccgac
acggtggggcggcggctcgccgtcctgcgtcggctcgcgcaccccgcggcggccgccccg
tacaacggcgggtcgccgctccgggtagttgtggccccggtgcgcgcggtcctgcagccg
ctcgtggccggcttgggcgacctcgagccggtctcgctggccgtggggcaggaggcgccg
ttcgacgaggtcgtgcgggccctcgccgatgccgcctacgcccgcgtcgacatggtgacc
catcgcggcgagttcgcggtccgcggcgggatcatcgacgtcttcccgcccaccgaggac
cacccggtgcgcgtcgagttcttcggcgacgaggtcgagcagatgcgctggttcgccgtg
gccgatcagcgctcgctgagcggcccgaacgtccaccaccccacggtgctgttcgcgccg
ccgtgccgcgagcttctcatcactccggcggtcatgagccgtgccgcgaagctcaagggc
gcgctgcccgcggcggcggacatgctcgagaagatcgcgggcgggatcgccgtggagggc
atggagtcgctcgcgccgctgctcgtggaccggatggtgccgttcatcggcgagctgccc
gagggctcagtctcgctcaccgtggagcccgagaaggtgcgcgcccgcgcccacgacctt
gccgcgaccaacgaggagttcctcgccgctgcctgggccacggcgtccgacggcggctcc
gcgcccctcgacgtctccctcgcccaggtttcgggtaccgagggcgtggccgccgagcgg
gccggccggctcgaggacgcgagcttcgcgacgctcggagaggtccgtgccgacgcgcag
tcccgcggcgtgagctggtggtcgctgacctccctcggggtcgacgcggagacggtggcg
gacgtcgacgtcgtgaccatcgccgcgcgcgagccgcgcggctaccagggcgacgtggca
gagatgatggagttcatcggctcgcgcgtgcgcgagcagtggcggatcgtcgtcgcgacc
gacggcgccgggcccgcccagcgcctcgccgagctgttccacgacgccggcatcccgtgc
gcccggatcgacgggctggaccgtctgccggagccgggcatcatcgagatcaccaaggcg
cccgcgggcaagggcttcgtcctcgatgggctcacgctcggacttctgaccgaggccgac
ctgctcggccgggccagcgccgcggggacccgcgacatgcgcaagatgccctcgcggcgg
cgtaacgccgtcgaccccctttccctgcatgcgggcgacttcgtggtgcacgagcagcac
gggatcgggaagttcgtggagctcatccaacggaacaccggtccccgcggtgcggagacc
gtgcgcgagtacctggtcctcgagtacgcccccgccaagcgcggcgcgccgggggaccgg
ctcttcgtcccgaccgaccagctcgaccagatcacccgctacgtgggcggggacacgccg
tcgctgtccaagatgggcggcgcggactgggcgtctaccaagtcgaaggccaagaaggcg
gtcaaggagatcgcgggcgagctcatccggctctactcggcgcgcatggcctccaagggc
cactcgttcggcccggacacgccgtggcagcgcgagctcgaggaggcgttcccgtatgtc
gagacgcccgaccagctcaccacgatcaacgaggtcaaggcggacatggaacgcgaggtc
ccgatggaccggctcgtctccggcgacgtgggctacggcaagacggagatcgccgtccgg
gccgcgttcaaggcggtccaggacggaaagcaggtggcggtcctcgtgcccaccactctg
ctcgcgcagcagcacttcgagacgttttccgagcgcttctcgggcttcccggtccgagtc
cgggcgctctcgcgcttccagacggccgccgaggcgaaggagacgatcgaggggctcaag
accggctcggtggacgtggtgatcggcacccaccggctcctgtccaaggaggtgcagttc
aaggacctcggcctcgtgatcatcgacgaggagcagcggttcggcgtcgagcacaaggaa
gagctcaagaagatgcgcaccaacgtggacgtcctggccatgtccgcgaccccgatcccg
cgcacgctcgagatgtccttgacgggcatccgcgagacgtccaccctcgccacccctccc
gaggagcggcaccctgtgctgacgtacgtcggcccgtacacggacaagcaggtctccgcc
gccatccggcgcgagctcatgcgcgagggccaggtgttcttcgtgcacaaccgggtctcc
tcgatcgagaagcaggccgcggcgatccgggagctcgtgcccgaggcgcgagtcgaggtc
gcccacggccagatgtccgagtcgcggctcgagaagatcatcgtggacttctgggagaag
cgcttcgacgtcctcgtgtgcaccacgatcatcgagacgggcctggacatctcaaatgcc
aacacgctcatcatcgaccgcgcggaccagtatggactctcgcagctgcaccagctccgc
gggcgtgtgggccgaggccgcgagcgcgcctacgcgtacttcctctacccggcggagaag
ccgctcggcgaggtggcgctcgagcggctcaaggccgtcgcagcgcacaacgagctcggc
gcgggcatgcagctggccatgaaggacctcgagatccgcggcgcgggcaacctgctcggc
ggggagcagtccggccacatccagggcgtcgggttcgacctgtacatccggctcgtgggt
gaggccgtggccgacttccgcggcgagggcgaggagaaggtggccgagatgaagatcgag
ctgcccgtcaacgcccacctgccgcacgactacgtgccgggggagcggctccgcctcgag
gcgtaccgcaagcttgccgccgcgacggacgacgccggcattgccgaggtcatggaggag
ctcaccgaccgctacggcgagccgcccgcacccgtggagaacctcgcgtccgtggcccgc
ttccgggtccgtgcgcgcgcggccgggttgaccgacgtcgcactccaaggcaatatggtg
cgcttcgctcccgcggacctgccggagtccaagcagatgcggctcacgcggatgtacaag
ggcgcgcagtacaagccggcgctcaacgcggtgctcatccccaagcccaagaccgccccc
gtgggcggtcgggacctggcggacggcgagatcctcgcatgggcggaccaggtggtcgag
gcgatcttcgccccggcccccgcccccaccccctag
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