Capnocytophaga cynodegmi: CGC48_08155
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Entry
CGC48_08155 CDS
T05499
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccyn
Capnocytophaga cynodegmi
Pathway
ccyn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGC48_08155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccyn03400
]
CGC48_08155 (mfd)
Enzymes [BR:
ccyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC48_08155 (mfd)
DNA repair and recombination proteins [BR:
ccyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGC48_08155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ATA69330
UniProt:
A0A250E8P1
LinkDB
All DBs
Position
complement(1826349..1829669)
Genome browser
AA seq
1106 aa
AA seq
DB search
MLQKTSENISYTELLSKINEGERCLTINHLSGASLSFVITNLFRNTKRNLFVMLSDKEEA
AYFLNDLESLLSDEHVIFFPDSYRRPYQIEDTDNANVLLRAEVLNRLGSHQTPLIVVSYP
EALFEKVITRKQLEKNTLKIKKGDSLSLDFLNEMLFTYNFNRTDFVTEPGEFSVRGGIVD
VFSFSNNEPYRIEFFGNEIESIRTFDVETQLSTQQLSKITIIPNIENKENEEVRQSILEY
ISGETLFIAKDIDSFPQKIDKLFNKSVEIYEKLSNEVKHIAPEVLFCQSNELLERIGSFQ
SIFTGANSLFSSEKIVFRTNPQPAFNKQFELLISYLNEKHEEGFTNYIICSTEQQAKRFD
DIFKEMEQKVHYQTAILSLHSGFVDSDNKINVFTDHQIFERYHKFHLKNGYAKKQAITLK
ELTQLTVGDYVTHIDHGIGKFAGLQKIEVEGKMQEAIKLIYGDRDVLFVSIHSLHKITKY
NGKDGKPPKIYKLGSGAWKALKKKTKARVKEIAFNLIQLYAKRKESSGFAFAHDSYLQNE
LEASFLYEDTPDQSKATAEVKADMKSPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQV
AVLVPTTILAFQHYQTFSSRMKDFPVRIDYLNRFRTAKEKKNILEELAKGSLDIIIGTHQ
IVNESVKYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARD
LSVINTPPPNRYPIDSQVIHFNEEIIRDAVAYEIQRGGQVFFINNRVENIREVAGMLQRL
VPDAKIAVGHGQMDGKKLEETMLAFMDGAYDVLVATTIIESGLDVPNANTIFINNAHNFG
LSDLHQMRGRVGRSNKKAFCYFITPPFVAMSDDARKRIQAIAQFSDLGSGFNIAMKDLEI
RGAGDLLGGEQSGFINEIGFETYQKILQEAIVELKENEFSELYQTKEEDKSYLNDTQIDS
DFELLFPDTYVNRVAERLNLYNELSNISSEADLLTYEKNLIDRFGQLPPQAVDLLNSVRL
KWFATKMGIEKLVMKNGKMTGYFISDQESPFYQSSRFQKVLQFVQCHPDRCKMQEKETRN
GLRLLLIFEGITSIDKALNIMRLLEK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
attcttcaaaagacctctgaaaatatatcatataccgaattgctttcaaaaataaacgaa
ggcgaacgttgtttaactatcaatcatttatcaggagcttcattatcatttgtcattacc
aatcttttccgaaatacgaaacgaaatttgtttgtgatgctttcggataaagaagaagca
gcctattttctgaatgatttggaaagcctgttgagcgatgaacacgtaatatttttcccc
gacagctaccgccgtccgtatcagattgaagacacggataacgccaatgtattgcttcgt
gccgaagtgttaaaccgattgggttcacatcaaacgcctttgattgtggtgagttatcct
gaggctctttttgaaaaggtaattactcgcaaacaactcgaaaagaacaccttaaaaata
aaaaaaggagactctttatctttggatttcctcaatgaaatgctttttacttacaatttc
aaccgaacagatttcgtcaccgaacctggggagttttcagttcgtggtggtattgttgat
gttttttctttctcgaacaacgaaccttaccgcattgagtttttcggcaatgaaatcgaa
agtatccgaacttttgatgttgaaacacagctttctacacaacaattatcaaaaattacg
attatcccaaacatcgaaaataaggaaaatgaagaagtaaggcagtccattttggaatac
atttcgggagaaacgcttttcatcgccaaggatattgatagttttcctcaaaaaatcgat
aaattatttaataaatccgttgaaatttacgaaaaactatcgaacgaagtcaaacatatc
gctcccgaagtacttttctgtcaaagtaatgaacttttggaacgtatcggctcttttcaa
tctattttcacaggagcgaactcattattttcttcagaaaaaatcgtttttagaactaat
ccacaacctgcattcaataagcaatttgaactattaatcagctatttaaacgagaaacac
gaagaaggttttaccaattacattatttgttccaccgagcaacaagcaaagcgttttgat
gatattttcaaagaaatggaacaaaaagtgcattatcaaaccgccattttatcgctacac
agcgggtttgtggattcggacaataaaatcaacgtctttaccgaccatcagatttttgaa
cgttatcataagttccacctaaaaaatggatatgctaaaaaacaagccattacgcttaaa
gagctcactcaacttactgttggtgattatgttacgcatatcgaccacggcatcgggaag
tttgcaggattacaaaaaattgaagtagaaggcaaaatgcaggaagccatcaaacttatc
tatggcgaccgcgatgtactttttgtcagcattcattccctacataaaattacgaaatac
aacggcaaagacggcaaacctccgaagatttacaaactaggttcgggagcgtggaaggcc
ctgaaaaagaagacaaaagctcgggttaaagaaatcgccttcaaccttattcaattgtat
gccaaacggaaagaatctagcggttttgcctttgctcacgacagttatctgcaaaacgaa
ttggaagcctcttttctttacgaagatacgcccgaccaaagcaaagctactgccgaagtc
aaagccgatatgaaaagtccgaaaccaatggataggctcgtttgtggcgatgttggcttt
ggaaaaacagaagttgccattcgggcagcctttaaagcggttgataacggaaaacaagta
gccgttttggtacctacaaccattttggcatttcaacattatcagacatttagcagcaga
atgaaagattttccggtgaggattgattacttaaatcgattccgaacggcaaaagagaaa
aaaaacattctggaagaactcgccaaaggttcgctggacatcatcataggaacacatcaa
attgtaaatgaaagtgttaaatacaaagatttaggacttctaatcgttgatgaagagcaa
aaatttggtgtgggtgtgaaagacaaactcaaaacgctgaaagaaaaccttgacgtactg
acacttacggcaactccaattccaagaacattgcaattcagtttgatggcagcaagggat
ttgtcagtaatcaatacacctccaccaaatcgatatcctattgatagtcaagttatccat
ttcaatgaagaaattatccgtgatgccgttgcttacgaaattcagcgaggcggacaggta
tttttcatcaataatcgagtggaaaatatccgtgaagtggcaggaatgctacaacgactc
gttcctgatgccaaaatagccgtaggtcacgggcaaatggacggcaaaaaactcgaggaa
acaatgcttgcctttatggacggagcttatgacgttttggtagcaacgaccatcatcgag
agtggtttagatgtgcctaatgccaacacgattttcatcaataacgctcataattttggc
ttgtccgacctacatcaaatgcgtggacgtgtgggacgaagcaacaaaaaagccttctgt
tatttcatcacacctccgtttgtagcgatgagcgatgatgctcgtaaacgaatacaagcc
attgctcaattttcggacttaggaagcgggttcaatattgcgatgaaggatttggaaata
cgaggagcgggtgatttgctcggtggagaacaaagtggtttcattaacgaaatcggattt
gaaacctatcagaaaattttgcaagaagccatcgtagagctgaaagaaaacgagttttcg
gaattgtatcaaacgaaggaagaagacaaatcatatctaaatgacacacaaattgatagt
gattttgagcttttatttccagatacttacgtaaaccgagttgcggaacgattaaacctt
tacaacgagctaagtaacatcagttcggaagccgatttactaacctacgaaaagaatctg
attgaccgttttgggcaattgcctcctcaggctgtcgatttactcaatagcgtacgtctg
aaatggtttgcaaccaaaatgggaatcgaaaaattagtaatgaaaaacggaaaaatgaca
ggatattttatttccgaccaagaaagtccgttttatcaaagttctcgttttcaaaaagta
ttgcaatttgtgcaatgccaccccgaccgatgcaaaatgcaagaaaaagaaacccgcaac
ggactacggttgttgcttatctttgaaggtataacctcaatagataaagctttaaatatt
atgcgattacttgaaaaataa
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