Chryseobacterium daecheongense: MUU74_07305
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Entry
MUU74_07305 CDS
T08680
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cdae
Chryseobacterium daecheongense
Pathway
cdae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cdae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUU74_07305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdae03400
]
MUU74_07305 (ligD)
Enzymes [BR:
cdae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUU74_07305 (ligD)
DNA repair and recombination proteins [BR:
cdae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUU74_07305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UOU99755
LinkDB
All DBs
Position
complement(1498601..1500472)
Genome browser
AA seq
623 aa
AA seq
DB search
MLAKSFDKAFDDKGWIFEIKWDGYRAIADLSKDHPLFYSRNGISFLSKFQKISRDFDSQQ
HKMIIDGEIVAYDDHGKPSFQLLQQIGDNPDLALVYQVFDLLWLNGYSTENLPLLQRKEL
LKEALVETDVIKYCDHIPEKGINFFEQMKKMKMEGMIAKKADSLYIENLRTTDWLKIKFS
DTDEAIICGFTEPRGSRKNFGALILGKYIDGKLTYCGHTGTGFNSTTLKEMHQRLEKLII
KKSPFEIIPKTNMPVTWVQPKLVCEIKYSEMTKDGIFRHPVFLAIREDKEPEEINDTSEE
INNIQKTKEMKAASSKTKTSEKEVTLNKHKVKLTNQDKIYFPKDNITKGDVIEYYQSVAE
HILPHLKNRPLSLNRFPNGIEEQGFYQKDASDNIPDWIKTTPVHSESNDKYIDYIICNDK
ATMAYLNNLGCIDFNPWNSSLPDLENPDFLVLDLDPSKKNTFDDVIETALQVNEVLKSIE
IKGYCKTSGSTGIHVYIPMGGKYDFDQVKDFAHILMQQVQERLPDITTLERNLKKRDDDK
IYLDYLQNRTGQTLASAYSLRPKEGASVSMPLDWEELKPGLKPTDFNIHNALTRIKEKGD
LFKPVLGKGIDMVKALELLQNLG
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaatcttttgataaagcattcgatgataaaggctggatttttgaaataaaa
tgggacggatacagagctattgccgatctcagcaaagatcatcctctcttctattcccgc
aatggaatttcttttttatctaaatttcagaaaatatcccgggatttcgattcacaacaa
cataaaatgatcatagacggagaaattgtagcgtatgatgatcacgggaaacccagcttc
cagcttttacagcaaatcggtgacaatcctgacttagccttggtttaccaggtttttgac
ctgctttggcttaatggctattccaccgaaaatcttccgctcctccaaagaaaagaactt
ttaaaagaagcgcttgttgagacagatgtgattaaatactgtgaccatattcctgaaaaa
ggcattaatttttttgagcagatgaaaaaaatgaagatggaaggaatgatcgctaaaaaa
gcagacagcctttatatagaaaacctccgaactacggattggcttaaaataaagttttct
gacaccgatgaagccattatttgtggatttacggagcccaggggatccagaaaaaatttc
ggagcattgattttagggaaatatattgatggaaagctcacatattgcggacataccggg
accggattcaacagcactacattaaaggaaatgcatcaacgacttgaaaaactgattatc
aagaaatcccctttcgaaatcattccaaaaaccaacatgcctgtgacctgggtacaaccg
aaactggtctgcgaaatcaaatattccgaaatgaccaaagacggtattttccggcatccg
gttttcctggctatccgggaagacaaagaacccgaagaaattaatgatacctctgaagaa
ataaacaacattcaaaaaacaaaagaaatgaaagcagcctcttcaaaaacaaaaacatct
gagaaagaagttactttaaacaagcataaagtaaaactgaccaatcaggataaaatctat
ttcccgaaggataatataacaaaaggagacgtgatagaatattaccaatccgttgcagaa
catattttacctcatttaaagaaccgtccgctttcattgaaccgcttcccgaacgggatc
gaggaacagggtttctatcaaaaagatgccagtgataatattccggattggataaaaacc
acgccggttcactctgagtcgaacgataagtatatcgattacatcatctgtaatgataaa
gcaacaatggcttatcttaataatttaggttgcatagattttaacccgtggaacagctcc
ttacctgatcttgagaatcctgattttctggtgttagatcttgatccatccaaaaaaaat
acatttgatgacgtgattgaaaccgcactccaggttaatgaagttctgaaatcaatagaa
atcaaagggtattgtaaaacttccggaagtacgggaatccacgtttatattcctatgggt
ggaaaatacgattttgaccaggtaaaagactttgctcacattctgatgcagcaggtccag
gaaagacttcctgatattactactttggaaagaaatttaaagaaaagggatgacgacaaa
atctatctggattatcttcaaaacagaaccggacaaacattagcaagcgcttacagcttg
cggcctaaagaaggcgcttccgtttctatgcctttggattgggaggaattaaaaccggga
ttaaaacctacagattttaatattcataatgcattgactagaattaaagaaaaaggagac
ttgtttaagccggtcttaggaaaaggaattgatatggtaaaagcgctggaattgttgcag
aatcttgggtaa
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