Caldicellulosiruptor danielii: SOJ16_000620
Help
Entry
SOJ16_000620 CDS
T09647
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdan
Caldicellulosiruptor danielii
Pathway
cdan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOJ16_000620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdan03400
]
SOJ16_000620 (mfd)
Enzymes [BR:
cdan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOJ16_000620 (mfd)
DNA repair and recombination proteins [BR:
cdan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SOJ16_000620 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
AAA_14
Motif
Other DBs
NCBI-ProteinID:
WPX09415
LinkDB
All DBs
Position
691897..695322
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLERLDSFKTLEDIVAKKSLPVVITGIGEMGKAFVVKSLCEKFNKKALFITTQRSKL
EWERRFKSFFGNVVSLQERENPYVASFAKSKDSEISRMEQFVRIFEEGFDILILSGQSLF
EKYANLKFDYILITEGLDIQLETLIQKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVANT
YPVRIEFFGDTIDTIRLFDVGTQKSFEKIDSIKIYKAIEWDLQEDFSEASKHIKDDYKKM
KSKLKEESRKNLEETFKEVVEGLRLDVERLYPYYYKQFLSLIDIFAECLIFIDEYNQVFS
SLKAFEQEMQEMFSDLLEKGFVLPKMVDCYYTVDEILQKLSNAIILQTFASSIRELELKE
IISFNFFRELPTYNAQKEVLIDDLKYYMSKNYTINLFTGSRTSLEDLKEILLKENTQFFE
LDEPEAEKPGIYLIAQSVEKGIEIHDIRWVCLSFFHLEKKKETEAKKRVKSKKDAFYTIE
DLKPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDIVQLYAKRQLGKGFKFSKDTLWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKNETQQKKIIKGLKEGTIDIVIGTHRLLS
NDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRFPVQTFVLEYNERIIKEAILREISRGGQVFYLYNRVKDIQEVAAKLQNLVGE
GVKIACAHGQMPEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSNRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRG
AGSMLGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSGYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISIL
QLQECLFRLQFVNSEMLFKAMNKFLQKKLSCSQNKDDCLQLFIENNWLDTMIAILEDLQE
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaggcttgatagcttcaaaactcttgaagatattgttgctaag
aaaagcctgcctgttgttattacgggcattggtgaaatggggaaggcttttgtggtcaaa
tctctatgtgaaaaatttaacaaaaaggcattgtttataacaactcaaagatcaaaactc
gagtgggagcgaaggttcaaaagcttttttggtaatgtggtgagtctgcaggaaagagaa
aatccttatgttgcatcttttgcaaagagcaaagattctgaaattagcagaatggagcag
tttgtaagaatttttgaagaaggttttgacattctaatattaagtggccaaagtcttttt
gaaaagtacgcaaatttaaagtttgattatatccttattacagaagggcttgacattcag
cttgaaacccttatacaaaagcttttaaaattcgggtatgaaagagttaaaactgtcgaa
aagaaaggacagttttctcaaaagggtggcatagttgatatatatcctgtagcgaacaca
tatcctgtgagaattgagttttttggagataccatagacacaattagactttttgatgtt
ggaacccaaaagtcttttgaaaaaatagatagtattaaaatttacaaggcaattgagtgg
gatttgcaagaagacttttcagaagcctcaaaacatataaaagatgactacaaaaaaatg
aaatctaagctgaaagaagagagcagaaagaatttagaagagactttcaaagaagtggta
gaaggacttcggctggatgttgaaagactatatccatattattataaacagtttttatca
ttaattgatatttttgctgaatgtcttatttttattgacgagtataatcaagtcttcagt
agcttgaaagcttttgagcaagagatgcaagagatgttttcagaccttttagaaaaagga
tttgtgcttccgaagatggttgactgttattatactgttgatgagattttgcaaaagctc
tcaaatgcaataattcttcaaacgtttgcatcatctattagagagcttgagctgaaagag
attatatctttcaatttctttcgagaacttcccacctacaatgctcagaaagaggtttta
attgatgatttgaagtattatatgtcaaaaaactataccataaacctctttacaggaagt
cgaacatcccttgaggatttaaaagagatacttttaaaagaaaatacacagttttttgag
cttgatgagccagaagcagaaaaaccgggaatatatctaattgcccagtctgtcgaaaag
ggcattgaaatacatgatatcagatgggtttgcctttcatttttccatcttgaaaagaaa
aaggaaacagaagcaaaaaagagggtaaaatctaaaaaggatgctttttataccattgaa
gatttaaaaccaggtgattttgttgttcacaggacacatggtattggcaaattcttggga
tttgaaaagattacagttgagggtacaacaaaagagtatgtaaaacttgaatatgccaac
tcttcttacctttatgttccaaccacgaacttagatgtgattgaaaagtatattggaact
gatgatgtacagccaaaactatctaagcttggttcgcaggagtggcaaaaacaaaaacaa
aaagtgagaaaatcccttgagattgttgcaaaagatatagttcagctgtatgccaaaaga
cagcttggtaagggttttaaattttcaaaagatacgctgtggcaaaaagagtttgaggaa
aagtttccatataccgaaacagaaggtcaacttcaggccatagaagagataaaaagagat
atggaaagtgaaaagccgatggacaggatactttgtggcgatgttggttatggcaagact
gaggttgcaatgcgagctgctttcaaagctgtgatggattcaaaacaggtggcagtactt
gttcccacaactatacttgcgcagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttgaaaaatgagacacaacaaaagaagata
ataaaagggttaaaagaaggtacaattgacattgtgattggtacgcacaggctattatca
aacgatgttaagttcaaagaccttggtcttttgattattgatgaagagcacaagtttggt
gtggaggcaaaggaaaagattaaaaaactaaaaacaaatgtagatgttctaacccttacc
gcaacacctataccaaggacacttaacatggcacttttgggaatcagggatttgagtgta
attgaagacccgccggaagacaggtttccagtgcagacatttgtgcttgagtacaatgaa
aggataataaaggaggctattttaagagaaatttcaagaggaggtcaggtattttatctt
tataacagagtaaaagatatacaagaggtggctgctaagctacaaaaccttgtgggtgag
ggtgtgaaaattgcgtgtgctcatgggcaaatgcccgaagaagagttggaaagagtcttg
cttgattttattgaaggcaggtacgatgtgcttgtgtgcacaacgataatagaatctggg
gttgacatgccaaacgtcaatacacttattgtggaagacagtgacaggcttggtcttgca
cagctttatcagctaagaggaagggtaggtcggtctaacaggctggcatatgcatatttt
acatttagaaaagacaaggtactgtccgaacaggcacagaaaagacttgctgcaataaag
gagtttacagaactcgggtctggttttaaaattgcaatgagggatcttgagataagaggt
gctgggtctatgcttgggaaacttcagcacgggcatataaacagtgttgggtatgacatg
tatattagacttctttcagaagagataaggcggcttaaaggcgaaaatatacagccagag
attgaacctcagatagatgtaaaggtaagtgcgtttattagcagcggttacattgacgat
gaaaaagagagaattaatatgtacaaaaaaatttcgtcaatcgagtcaaaagatgatgta
aacgatatttatgatgagctgatagatagattcggagatgtgccgaaagaggttgacaat
ttaataaaagttgcgtatttgaaatgtttgtgtaaaaaagcaggtataataagtattttg
cagcttcaagaatgtctttttagacttcagtttgttaatagtgaaatgctttttaaagca
atgaacaagtttttgcagaaaaagctttcatgttcgcaaaacaaggacgactgcttacag
ctctttatagagaataactggcttgataccatgatagctattttagaagatttacaagaa
agttaa
DBGET
integrated database retrieval system
