Cryptococcus deuterogattii: CNBG_0542
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Entry
CNBG_0542 CDS
T09796
Name
(RefSeq) ATP-dependent RNA helicase DHX8/PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBG_0542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdeu03041
]
CNBG_0542
Enzymes [BR:
cdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNBG_0542
Spliceosome [BR:
cdeu03041
]
Complex C
Other components
Step II factors
CNBG_0542
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_30
EDC4_C
AAA_19
nSTAND3
AAA_16
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
88176777
NCBI-ProteinID:
XP_062880693
LinkDB
All DBs
Position
2:complement(699260..704205)
Genome browser
AA seq
1188 aa
AA seq
DB search
MSTDKELYKLELLSLVSKVSQELFNHTKLQDKKLAEFVIALHEQSKTTEAFQKKLNEIGA
DFPEWFIKNLDRLIVTMHPKYKRKAAKMKASGQSRKSGDGQSIMDEQKQLQARKFPGLSM
PDQEWGPAEKYVDERAAKEPHETLSEPFSTSDTMAQLESIASRRNRPAAEDYLDGEPAAK
KMRNTSSSGHDGSSGRRGGYEAGGFRDSSRHGRPTLDERPVLYKIYNGTIANITDFGAFV
TLDGVERRVNGNQRSNEGLVHVSNITNGRVTSPRDFLKRGQQVKVKVMTVSPKIGLSMKD
VDQNTGYDLSPHLTVQTAEEAAVQQQRMSSYAASGSNSTPLLAVDERQRSSAKRLSSPER
FEIKQLIASGAVSAADYPDLDEDFSTNVANHEIEEDIDVEVNEVEPAFLSGQTKVTLELS
PVKIIKAPDGSLNRAALAGASLANERRDLKRLEANEQADAETREINQPWLDPMANQNERQ
FASDIKGNLLGQKAAQMPAWKAANKVVSYGKITSMSIQEQRRSLPIYKLRDQLVAAVRDN
QILVVVGDTGSGKTTQMAQYLAEEGFLEKGRLGCTQPRKVAAVSVAKRVAEEVGCRLGAE
VGYTIRFEDMTSPETKIKYMTDGMLLRELLVDPDCSKYSVIMLDEAHERTIATDVLFGLL
KKACKRRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRTYPVETLYTKEPEPDYLEASL
ITILQIHLMEPEGDILLFLTGQEEIDTACEVLYERVKALGPQVPELLILPVYAALPSEMQ
SRIFEPAPPGARKVVIATNIAETSITIDGIYYVIDPGFAKQNAYDPKLGMDSLIVTPISQ
AQARQRAGRAGRTGPGKCYRLYTEVAYRNEMLSNPIPEIQRTNLASTILTLKAMGINDLI
GFDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKMADFPLDPPLSKMLIKSVDYGC
SEEALTIVAMLQAGGQVYYRPKDKQTQADAKKAKFHQPEGDLLTLLAVYNGWKNSKFSNP
WCFENFIQTRAMKTAQDVRKQLIGIMDRYKHDLVSCGTNYNRVRMAICSGFFRNAAKKDP
TEGYKTLVEGTPVSIHPSSALFQRPPEWCVYYELVLTAKEYMHQVTVIEPKWLSEVAPTF
FRIADQNKISKRKASEKIEPLFDRFAADKDDWRLSKQKKAARSSQTFG
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgataaagagctatataagctcgaacttctctcgcttgtgtcgaaggtttcg
caggagctcttcaaccacactaagcttcaagataaaaagctagccgaatttgtgatagca
ctacacgagcaaagcaaaacgactgaagcgttccagaagaagctcaatgagatcggcgca
gactttcctgaatggtttatcaaaaatctcgacagactgattgttaccatgcacccaaag
tataaaaggaaagctgccaagatgaaagcctcggggcagtcacgaaagtctggtgatgga
caatctatcatggatgagcagaagcaacttcaggcgagaaagtttccggggttgtccatg
cctgaccaagagtgggggcctgcggagaaatatgtcgatgaaagggctgcaaaagaaccg
cacgagaccctttcggaaccattctcgaccagtgatactatggcccagttagagtcgatc
gcgtctcgccgaaatagaccggcggcagaggattacttggatggggagcctgctgcgaag
aaaatgcggaatacctctagcagcggtcatgatggttcgtcaggacgacggggtggatac
gaagctggcggatttagagattcttccagacatgggcgtccaacacttgatgagaggcct
gtcctttacaagatctacaacggcactatcgcgaatatcaccgatttcggagcttttgtg
actttagatggcgtagaaagaagggtcaatggtaatcagaggtcgaatgaaggcttggtc
catgtctcgaatattacaaatggaagagttacctctcccagggatttccttaaacgaggt
caacaagtcaaagtcaaagttatgaccgtcagtcctaagattggtctaagtatgaaggat
gtcgatcagaacaccggttatgatctttccccacatctcactgtccagactgccgaagag
gctgcggtgcagcagcaaaggatgtcatcttatgccgctagtggaagcaacagcactccc
ctcttagcagttgatgagcggcagcgatcgagtgcgaagcgattatcaagtcctgagcgg
ttcgagatcaagcagctcatagccagtggggctgtttctgcagctgattaccctgatctt
gatgaagactttagcaccaacgtcgccaatcatgagattgaagaagacattgacgtcgaa
gtgaatgaagtcgagcctgccttcttatcgggccagaccaaagtgaccttggaactctct
cctgttaaaattatcaaagcaccagacggctcacttaaccgtgctgctttagcaggcgct
tcactagcgaacgaaagacgggacctcaaacgtttagaagcgaatgagcaggccgacgca
gaaaccagggagattaaccaaccttggcttgatcccatggcgaatcaaaacgagcgacag
tttgcatcagacatcaaaggcaacctgcttggtcaaaaggcagctcaaatgcctgcctgg
aaagctgcaaataaagttgtgtcgtatggcaaaatcacttctatgagtatacaagaacaa
agacgcagtttgcctatctacaaattacgggatcaattggtcgccgctgttcgggacaat
caaattcttgttgtggttggagacactggatctgggaagaccactcagatggcccaatac
cttgctgaagaaggattcctcgagaaagggcgtttgggatgcactcaaccgcgaaaggtt
gccgctgtttctgttgctaagcgtgttgcagaggaagtgggttgtcgactcggggctgaa
gtcggctacactatccgttttgaggatatgaccagtcctgagaccaagatcaagtacatg
accgatggtatgctgcttcgtgaattgctggttgatccggattgttcgaaatactcggtg
attatgcttgatgaagcccacgagcgcacaatcgcaactgacgtcctctttggtctcctg
aaaaaggcttgcaagcgacgcccagaccttaaactgatatgtacttctgccacactggat
gctgccaagtttgcaacgtacttctggggttgccctatctttactattcctggccgaaca
taccccgtcgagacactttatacaaaggaacctgagcctgactacctcgaggcttctctc
atcaccatccttcaaatccatctcatggaaccagaaggcgatattcttcttttccttaca
ggtcaagaggagatcgatacagcttgtgaggtgctatatgagcgagttaaggcattgggt
cctcaagtcccagagcttctcattctaccggtttatgctgcacttccctctgagatgcag
tcacgcatttttgagccagctccaccaggtgcacgtaaggtagtcatcgcaaccaacatt
gcagagaccagtatcaccattgatggcatatactatgtcattgatcctggatttgcaaag
cagaatgcttatgacccaaagcttggtatggattctttgatagtcactccgatctcccaa
gcgcaggcgcgtcaaagagctgggcgtgctggccgcacaggccctggcaaatgttatcgc
ctctacacagaggtcgcttaccgcaatgaaatgttatccaaccctatccctgagattcaa
cgcaccaatcttgcatctactatccttactctgaaagcaatgggaatcaatgaccttatt
ggtttcgattttatggatccccctccagcagcaaccatgttgacagctttagagcaactt
tatgctcttggtgcattggatgatgaaggattgttgaccaggattggtcgaaaaatggca
gattttcctctagaccctcctttatccaagatgcttatcaaatctgttgattatggatgc
tccgaagaagccttaacaattgtggctatgctgcaagctggcgggcaagtgtactaccga
cccaaggacaaacagactcaagcagatgccaagaaagcgaaatttcatcaaccagaaggt
gaccttctgacattacttgctgtctataatggatggaagaactcgaaattcagtaatcca
tggtgctttgagaactttattcaaacacgagccatgaaaacagcacaagatgtaaggaaa
cagttgattgggattatggacagatataaacatgaccttgtgtcatgtggtactaattac
aaccgagtacggatggccatttgctctggattctttagaaatgctgccaagaaggatcct
actgaaggttacaaaacacttgttgaaggtacacctgtcagcatccacccctcaagtgcc
ttgttccagcgaccccctgaatggtgtgtgtattatgaactggtcctcactgcaaaggag
tacatgcaccaggtcactgttattgaaccaaaatggctttctgaagtagcaccgaccttt
ttccgtattgctgatcaaaacaagattagcaagcgtaaggcatctgagaagattgaacct
ctgtttgatcgatttgctgcagacaaagatgactggcgtctcagcaaacagaagaaggca
gctcgctcttcacagactttcggatga
DBGET
integrated database retrieval system
