Corynebacterium diphtheriae INCA 402: CDB402_0790
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Entry
CDB402_0790 CDS
T01688
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdh
Corynebacterium diphtheriae INCA 402
Pathway
cdh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDB402_0790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdh03400
]
CDB402_0790 (mfd)
Enzymes [BR:
cdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDB402_0790 (mfd)
DNA repair and recombination proteins [BR:
cdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CDB402_0790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEX46097
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All DBs
Position
827443..831243
Genome browser
AA seq
1266 aa
AA seq
DB search
MFVPDKSVPAAQPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGIDQARPWAIAALAHR
APVLVVTATGREAEDLSAELRAMLGEKVAWFPAWETLPHERLSPGADIAGQRARILSHIA
DYSVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDLVAKRGEF
ATRGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFPARELPIT
PEIAQRAAELAVKFQGNPTLQELLAKISDSIPSDGMEALIPALVDQPMVTLAELMPENTH
IVVVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADGPVATRGLDLDASSYRSYESLENT
AQKHTMPWWTFAPPGMFEASDGDTLPLEFEPGPTPRGDLEQIDQMMALLLAHTRDGGAAA
FIAPAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGLVFPKVRKQPGKP
ALPLVVITETDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTE
RVIQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAID
AVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFE
ERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELL
EQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVY
RKLAASANDKDLALVVEEMKDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKL
HPVELTDSKQVRLKRLAPSATYRAAAKAIQLPFPKEGAKVTDKQLRDVELLQWVADFIAE
MFEHDRVSVTGEKLPDKVISVAQPMSPAAARAERVAQRAAVRRQARNDDEDYEDRREARR
RKYRMR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgcctgataaatccgtgcctgcggcacaaccaccaatgcttgctggtttgctc
aaagttgctgccaccgatccaaagatcaagggactgcttcagcatgtaggcgaaccccat
ctgcatatcacaggcatcgatcaggcacggccgtgggcgattgctgcgttggcacaccgc
gccccagtgcttgtggtgacggctacggggcgtgaggcagaggacttatctgctgagctg
cgtgccatgttgggggaaaaggtggcgtggtttccggcatgggagacgttgccgcatgag
cgcttgagcccaggtgctgatattgctggtcagcgagcccgtattttgtcgcatattgca
gactattcggtggtggtgacggctgcgcgtggtttcagccagccgattgtttcacaggtt
gctggtcgagatcctttggtgttggaagttgattccgaatgtagtttggaagaagcaaca
cagcagttggtgtttcgggcttatcaccatgtggatttggttgctaagcgaggtgaattt
gcaacgcgcggcggcattttggatgtgtttcccacaacggctcagcatccagtacgtgtg
gagttttggggcgatgaggtttcagaaatccgtggattccaggttgctgatcagcgtgcg
attcctgattcggatgtgtcgcgggtagaggttttccccgctagagaactgcctattacc
ccagaaattgcgcaacgtgcagctgagctcgctgtgaagtttcaaggaaacccaacgttg
caggagctactggctaaaatttctgactctatcccgtcagatggcatggaggccttgatc
ccagcgttggttgatcaacccatggtcacccttgctgagcttatgcccgaaaacacccat
attgtggtggtcgggccggaaaagattcgtactcgtgtagcagatcttcaagctacggat
gccgagtttttggccgctggttgggaggctgctgctatgggcgctgatggtcccgtggca
acgcgtggcctcgatcttgatgccagctcgtatcgatcctatgaatcgctggaaaacaca
gcacagaagcacaccatgccttggtggacttttgcaccacctggcatgtttgaagcctca
gacggcgacaccctcccgttggaatttgagccgggacctacaccgcgtggcgatctcgaa
cagatcgatcagatgatggctctgctacttgcacatacgcgcgacggcggtgcggcagct
tttattgctccggctcaaggcgctatcaagcgcatggtggaacgctttaaggaacaagga
atccccacgaaggtggcaacacctggctggcagccaaccttgggtgaagtgacactgtat
caggcgatgagccatgcaggtttggtatttcccaaggtgcgaaagcaacctggaaaaccc
gcattgccgctggtggtgatcacagaaacagaccttaccggtaaccgagttggtgacatt
gctggtgcgaagcgccgcccagccaagcgccgtcaccgtgtggacccgcttgctttgaaa
accggcgactatgtggtccatgaaacccatggcatcggtcggttcctcaagatgaccgag
cgtgtgatccagtccggtgatgagacttcgcggcgcgaatacatcgtgttggaatacgcg
gcgtcgaaacgcgggcagccagcagatcaactgtatgtgcctatggattccctcgacatg
ctgagtaaatatgtcggcggtgaaaaacctaccctttctaaaatgggtggctcggactgg
aagaacaccaaaaagaaagctcgcgcagcggtgcgagaaatcgctggtgaactagtcgag
ctgtatgccaagcggcaatccgcgccggggcatgcgtttgcacctgattccccgtggcag
cacgagatggaagataacttcccctacgtggaaaccgaagatcagatgcttgctattgac
gcggtgaaagcggacatggagaagccttcgccaatggaccgcgtggtggtcggcgacgta
ggttatggcaaaaccgaagttgctgtgcgtgcggcatttaaggcggtacaggatggtcgt
caagtcgtggtgcttgttcctacaaccttgctggcccagcagcatttgagcacctttgaa
gaacgcatggcaggattccccgtgacgatcaagggcctgagccgttttacctctcctagt
gaatcaaaggagatccttaaagggcttgccgacggctccgttgacatcgtgatcggtacg
caccgcctgctgcaaacaggtgtgcagtggaaaaatctgggccttgtcatcgtggacgag
gagcagcgttttggtgttgagcataaagaacacatcaaagcattacgtacccatgtggac
gtgctcacgatgtcggcaactccgatcccgcgcactttggagatgtcgatggccggtatc
cgtgagatgtcgaccattttgaccccgccagaagatcgacacccgattttgacctacgtg
ggcgcccaagaagataaacaagtagcggcagccattaggcgtgagctgcttcgtgatggc
caagttttctatgtgcataacaaagtctctgacatcgagaaaaaggctcgggaactgcgt
gaactcgtaccggaagcacgcattgtggtggcgcatgggcaaatgagcgaagagttacta
gagcaaactgttcagggattctgggatcgtgaatacgatgttctggtctgtaccacgatt
gttgaaaccggtctcgacatcgcgaacgccaacacgcttatcgtggaaaatgctcaccac
atgggtctgtcacagctgcaccagttgcgtgggcgcgtagggcgttcccgcgagcggggt
tacgcttacttcttgtatcccaagggtgccacgttgacggaaaactcctatgaccgtctt
gctacgatcgcgcaaaacaacgatcttggtgctggtatggcggtggccatgaaagacttg
gaaatgcgcggtgccggcaatgtgttgggcgcgcaacagtctggtcatatcgccggagtg
ggctttgacctgtatgttcgtttggtgggagaagcggtcgaggcataccgtgcgctagca
gatggcaaggttgccgatgccacggagcaggggccgaaggagatccgcatcgatttgcct
gtcgacgcccacatccccgaggactacatcaactcagaacgattgcgcctcgaggtctat
cgtaaacttgccgcctcggccaatgataaggacttggcgcttgtggttgaggaaatgaaa
gaccgcttcggtcccgttccccacgaggtaaagcggctgctggcggtgtcacgcctgcgt
cacttagcacgcgcgacagggctaagcgatattggtgtgcagggcacacgcatcaagctg
cacccagtggaattgactgattctaagcaggtgcgtctcaagcgtctggcaccgtctgct
acctatcgcgcggctgctaaggccatccagttgccatttcctaaagaaggcgcgaaggta
acggacaaacagcttcgcgatgttgaactattgcagtgggttgctgactttatagcggag
atgtttgaacacgatcgcgtatctgtgacaggggagaagctgccggataaagtgatctcg
gtggcgcagcccatgagccctgctgcggcgcgagcggagcgcgtagcgcaacgggcagcg
gtgcgccgacaagcgcgaaatgacgatgaggactacgaagatcgtagagaagcgcgacgt
aggaaataccgtatgcgttaa
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