Caldicellulosiruptor diazotrophicus: CaldiYA01_18160
Help
Entry
CaldiYA01_18160 CDS
T08057
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Pathway
cdia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CaldiYA01_18160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdia03400
]
CaldiYA01_18160 (mfd)
Enzymes [BR:
cdia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CaldiYA01_18160 (mfd)
DNA repair and recombination proteins [BR:
cdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CaldiYA01_18160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
BCS81856
LinkDB
All DBs
Position
complement(1871146..1874571)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLEKLESFKRLEEDVVKKSLPLVVTGLGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFMSLFNSVVSLQERENPFVVSFAKSRDSEINRMEQFVKIFEDGFDVLILSSQNLF
EKYTNLKFDYIYLTEGLDIELGILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVASR
YPVRIEFFGDTIDTIRLFDVETQKSFERIDSVKIYKAIEWDLEEDFSEGLKRVKEDYKKM
KLKLKEDGRKNLEESFREVVEELQLNVERLYPYYYQQFFSVIDIFGECLIFVDEYNQVYS
SLKTFEQETQEMFSDLLEKGFVLPKMAECYFTTSEVLEKLSGSIILQTFVSVIKELELKD
IISFNFLRELPSYNGQKEVLIDDLKYYMSKRYTINIFTGSRTSLEDLADALLREDIQFSE
AEEPEVERTGVYLIARSIEKGIEVQDLKWVYLSFFHLEKKKENETKKRVKSKKDAFYTIE
DLKPGDFVVHRTHGIGKFLGFEKITVEGTTREYVKLEYANSSYLYVPTTNLDVIEKYIGT
DNAQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLRKGFKFSKDTVWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLKEGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRYPVQTFVIEYNERIIKEAILKEISRGGQVFYLYNRVKDINDVAAKLQNLVGD
SVKIACAHGQMEEEELERVLLDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRG
AGSLLGKLQHGHINSVGYDMYIRLLSEEIRRVKGENIQPEIEPQIDIKVSAFISSSYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKTGIISIW
QFQEDCFKLQFLNIKMLETAKKIFLEKGLSYSQNKDDTLQLLLASNCLDTLIAILEDLQE
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaaacttgaaagtttcaaaaggcttgaagaagatgtagtaaaa
aagagccttcctcttgttgttacaggccttggtgagatggggaaagcgcttgtggtcaaa
tctctatgtgaaaagtttaacaaaaaggcgttgtttatcacaactcaaagagcaaagctt
gaatgggaaagaaggtttatgagcctttttaatagtgtggtgagtctacaagagagagaa
aatccttttgtggtatcttttgcaaagagcagagattctgaaattaacagaatggaacaa
tttgtgaagatttttgaggacggttttgatgttctcatattaagtagccagaaccttttt
gaaaagtacacaaatttaaagtttgattatatctatcttacagaaggtcttgatattgag
cttggtatccttatagaaaagcttttaaaattcggatatgaaagagtgaaaactgtagaa
aagaaaggacagttttcgcaaaagggtggcatagttgatatatatcctgtagcaagtagg
taccctgtgaggattgagttttttggagatacgatagacacaattagactttttgatgtt
gaaactcagaagtcttttgaaagaatagatagtgtgaagatttacaaggcaattgagtgg
gatttggaagaggacttttcagaaggtttaaaacgcgttaaggaagactacaaaaaaatg
aaattgaaattgaaggaagatggcagaaagaatttagaggagagtttcagagaggttgta
gaagaacttcaactaaatgttgaaagactgtatccctattactaccaacaatttttctca
gttattgatatttttggtgaatgtcttatctttgttgacgagtacaaccaagtctatagc
agcttgaaaactttcgaacaagagacacaagagatgttttcagaccttttagaaaaagga
tttgtgcttccaaaaatggcagagtgttattttaccacgagcgaagttttagaaaagctt
tcggggtcgataattcttcaaacatttgtctcagttataaaggagcttgaactcaaagat
atcatttctttcaattttctcagggagcttccttcttataatgggcagaaggaagtttta
atagacgatttgaagtattacatgtccaaaagatataccataaacatctttacaggaagt
cggacatcacttgaggacttggcagatgcacttttaagagaagatatacagttttctgag
gctgaagaaccagaagtagaaagaacgggagtgtatctaatagcccggtctattgaaaag
ggcattgaagtgcaagatctcaaatgggtttatctttcgtttttccaccttgaaaagaag
aaggaaaatgagacaaaaaagagggtaaaatctaaaaaggatgccttttacacaattgaa
gatttaaaaccaggcgattttgttgttcataggacacacggtattggtaaatttttagga
ttcgaaaagattactgttgaaggcacaacaagagaatatgtaaagcttgaatatgccaat
tcttcttatctttatgttccaactactaacttagatgtaattgaaaaatatattggaact
gataatgcacagcctaaactatcaaaacttggatcccaagagtggcaaaagcaaaaacaa
aaggtgagaaaatctcttgagattgtggcaaaagacttagttgaactttatgcaaaaaga
cagcttagaaaaggttttaaattttcgaaagatactgtgtggcaaaaagagtttgaagag
aagtttccatatacagagacagaaggtcagcttcaggccatagaagagattaagagggat
atggaaagtgaaaagccaatggatagaatactttgcggtgatgttggttatggcaagact
gaagttgcaatgagagcagcgttcaaagctgtgatggattcaaaacaggtagcagtgctt
gttcccacaacaatccttgctcaacaacattacatgacattttctgcccgaatgaaagat
tttccagtaacaattgaggtcctttcgcgtttaaaaagtgagacacaacaaaagaaaatt
ataaaagggttaaaagaaggtacaattgacattgtgattggtacacacaggctactttcg
agtgatgttaaattcaaagaccttggacttttgattattgatgaagagcataagtttggc
gttgaagcaaaagaaaagattaaaaagctaaaaacaaatgttgatgttttgaccctcact
gcaacgcccataccaaggacgcttaacatggcacttttgggaattagggatttgagcgtg
attgaagacccgccagaagatagataccctgtgcagacgtttgtaattgagtacaatgag
aggataataaaggaggctattttgaaagaaatttcaagaggaggtcaggtattttatctt
tacaacagggtaaaagacataaacgatgtggcagctaaacttcaaaaccttgtgggcgat
agtgtgaaaattgcgtgtgctcatgggcagatggaagaagaggagttagaaagagtctta
cttgattttattgagggcaggtatgatgtgcttgtgtgtacaacgattatagagtctggg
gttgacatgccaaatgttaatacacttattgtggaagacagcgatagactgggtcttgct
cagctttatcagctaagaggaagggttggtcggtcttcaaggcttgcgtacgcatatttt
acatttagaaaagacaaggtgctgtccgaacaggcacaaaaaagacttgctgcaataaag
gagtttacagaacttggagctggttttaaaattgccatgagagaccttgagataagaggt
gctgggtctttgcttggaaagcttcagcatgggcatataaacagtgttgggtatgatatg
tatataagacttctctcagaagagataaggcgtgttaagggtgaaaatatccagccagag
attgaacctcagatagatataaaggtcagtgcgtttattagtagcagctacattgatgat
gaaaaagagagaattaatatgtacaaaaagatctcgtcaattgaatcaaaagatgatgta
aacgatatttacgatgagctaatagataggtttggagatgttccaaaagaggttgacaat
ttaataaaggttgcatacttgaaatgtttatgtaaaaagacagggataataagtatttgg
cagtttcaagaggattgttttaaacttcagtttttgaatataaaaatgcttgaaactgca
aaaaagatttttttggaaaaaggactttcatattcacaaaacaaggatgatacgttacag
ctcttgcttgcaagtaactgcctcgatactttaatagctattttagaagatttacaagaa
aattaa
DBGET
integrated database retrieval system
