Celerinatantimonas diazotrophica: CEDIAZO_01773
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Entry
CEDIAZO_01773 CDS
T07531
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEDIAZO_01773 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdiz03400
]
CEDIAZO_01773 (mfd)
Enzymes [BR:
cdiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEDIAZO_01773 (mfd)
DNA repair and recombination proteins [BR:
cdiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEDIAZO_01773 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAG9296619
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All DBs
Position
CEDIAZO_genome:complement(1895420..1898893)
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AA seq
1157 aa
AA seq
DB search
MTKLLPHFSLPEGPGDHKRIGQLPGSSIALAVYQYIHATQAPIIILTPDTRSAIRLEHEL
NGLNTGREIALLPDWETLPYDQFSPHQEIISTRLRILSQMFLNPSSLVVIATVATWMMRC
APKSYILGRSFSLKTSQQLDIETFRANLVDAGYQQVDQVIEHGEFAIRGSLLDIFPMGSD
DPYRIDFFDDEIDTIRSFDPDDQRSRDTIEQINLLPAHEFPTDSKAIENFRSRWRERFDV
PRESESIYQQVSKGIWPAGIEYYLPLFHESTSTISQLMPEDLCIITIEDINDAAQQFWHN
IQERYENRRHDRLRPLLEPNELYQNVDQCFATMKQFARLSMQQHAWTAAPGRVNLELEPL
PDIAFNHQLSEATQKLRQFIEKSADTICFVVESAGRREALSALLKPLKLPLKNITSLEQL
TGENRFYLFIAPLEQGFRAPSQKLIFIGESDLLGKQVVRNRSRKSHSQVNPDAMIRNLAE
LSIGQPVVHLEHGVGRYQGLNTLDAGGVTTEFLTLLYANDAKLYVPVSSLHLISRYSGSS
EDSAPLNKLGSDAWQKARKKAAEKVRDVAAELLNIYAKRAAKPGYPFKLSDDDYQQFCSE
FPFEETDDQVNAINAVVGDMSRPEAMDRLVCGDVGFGKTEVAMRGAFVAVSDNKQVAVLV
PTTLLAQQHYDNFCDRFANWPVRIEVLSRFKTAKQQSAILQDLADGKIDIVIGTHKLLSK
NIKFADLGLLIVDEEHRFGVRHKEKIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLSVKTFVRRRDDALIKEAITREITRGGQVYFLHNNVETIDRIAQELQQVLPQA
RVGIGHGQMRERQLERVMSDFHHQRFNVLVCTTIIETGIDIPNANTIIIDRADHFGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKAMTRDAKLRLDAISELEDLGAGFTLATHDLEIRGAG
ELLGEEQSGQIEAVGFTLYMEMLERAVNALKSGKEPSLDLLESNQADVELKIPALLPDSY
INDVNTRLSIYKRLANCENEQALRELQVELIDRFGLLPDAAKNLFSVQQLKQTATQLGLK
RVEAGNTTGMIEFSQQSSVDPSYLVALLQKANNQYQMDGPTRLKFNVQSVDRREKMEQIK
QLLNDFANHQLPEAHYA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagttgttgccacacttttctctgcctgaaggaccaggtgatcataaacggatt
ggtcaattacccggcagcagtatcgctttagctgtttatcagtatattcatgctacgcag
gccccgattattatcttaacgccagatacccgttcagcgattcgcttagaacacgagtta
aatgggttaaatacaggacgggaaatcgcgctactgcctgactgggagaccctgccgtat
gaccagttttctccccaccaggaaatcatctcaacgcggctacgcattctttcgcaaatg
tttcttaatcccagttcgctggttgtgattgcaacagtagcaacctggatgatgcgctgc
gcacctaaaagctacattttgggacgctcgttttctctaaagacttctcaacagttagat
attgaaacatttcgcgcaaacttagttgatgcaggatatcagcaagtcgatcaggtcatt
gagcatggtgaatttgccattcgcggcagcttgctagatattttcccaatggggtcagat
gatccctatcgcatcgacttttttgacgatgaaatcgatacgattcgcagtttcgacccg
gatgatcagcgcagccgtgataccatcgagcaaattaacctacttcctgctcacgaattt
ccaactgattcaaaagccattgaaaacttccggagtcgctggcgagaacgctttgacgtc
ccaagggaaagtgaatcaatttatcagcaagtctccaaaggcatttggccagcagggatt
gaatattatctaccactatttcatgaatcgacatccacaattagccagttgatgcccgag
gatctctgcatcattacgattgaagatattaatgatgccgcccaacaattctggcacaac
atccaggagcgctatgaaaatcgtcgtcatgaccggcttcgaccactgcttgagcccaat
gagctctatcaaaatgtagaccaatgctttgcaacaatgaaacaatttgctcgtttgtca
atgcaacagcacgcttggaccgcagccccagggcgagttaatttagagttagaaccgctg
cccgatattgcgtttaatcatcagcttagtgaagccacccaaaagttacggcaatttatt
gaaaaaagcgccgataccatctgttttgtggttgaatcagcaggccgccgggaagcgcta
tcggcgcttttaaaaccacttaagttaccgctgaaaaacatcaccagccttgagcaactc
accggtgaaaatcgtttttatctgtttattgcgccattagaacaaggatttagagctccc
agccaaaaattaatttttattggtgaaagcgatctgttgggcaaacaggtggttagaaac
cgctctcgaaaatctcattcacaggttaatcctgatgcaatgattcgcaacttagctgaa
ttatccattggtcagcccgttgtacatttagagcatggtgttggccgctatcaagggcta
aatacgctagatgctggcggtgtgacaaccgagtttttaaccctgctttatgccaatgat
gctaagctgtatgttcctgtttcgtcgttgcacttgattagccgctacagcggtagctca
gaagatagtgcaccactgaataaattgggcagcgatgcttggcagaaagctcgtaaaaaa
gctgctgaaaaagtccgtgatgtggcagctgaactgctcaatatatacgccaagcgagca
gccaagccaggttatccctttaagctaagtgatgatgactatcagcagttctgcagcgaa
ttcccgtttgaagaaacggacgatcaggtcaacgctattaacgcagttgtcggcgacatg
agccgacccgaagcaatggatcggctggtttgtggtgatgtagggtttggcaaaacagaa
gttgccatgcgcggtgcattcgttgctgtcagtgacaataaacaggttgctgtattagtg
ccaactactttgctagcccaacagcactatgataacttttgtgaccgctttgcgaactgg
ccagtccgtattgaggtattatctcgatttaagacagctaaacaacaaagcgctattttg
caagatcttgctgatggtaaaatagatatcgtgattggcactcacaaattactgtcaaag
aatattaaattcgccgatcttggcttattaattgttgatgaagagcaccgttttggcgtt
cgtcacaaagaaaaaattaaagcgatgcgagccgatgttgacatcctaacgctcaccgcg
acgcctattccgcgaacgctgaatatggcgatgagtggcatgcgcgatctatctattatt
gcaacacctccagctcgacgtttatccgtcaagacatttgtcaggcggcgtgatgatgca
ttaattaaagaagccatcactcgcgaaatcactcgcggtggacaagtctattttctgcat
aataatgtcgaaaccatcgatcgaattgcccaagaactgcaacaggtacttcctcaagcc
cgagtcggtatcggccacggtcagatgcgagagcgtcagttggagcgggttatgtctgat
tttcatcatcaacgctttaacgtattggtttgcaccaccattatcgaaacagggattgat
attccaaacgccaataccattatcattgatagagccgatcattttggtctggcgcaatta
caccagttacgagggcgtgttggccgctcacatcaccaagcgtacgcatacctgttaacg
cctcatcctaaggcaatgacacgtgatgccaagctacgactcgatgcaatatcggagctt
gaagatttaggtgcaggattcactctagccactcacgatttagaaattcgtggtgctggt
gaactactgggagaagaacaaagtggtcaaattgaagcggttggttttaccctttatatg
gaaatgctggaacgcgcagtgaatgcattgaaatcggggaaagagccatcacttgatcta
ctggagagtaaccaagcggatgttgaactgaaaattccggccttactccctgatagctac
attaatgatgtgaacactcgcctctctatctataaacgcttggcgaactgtgaaaatgag
caggctttgcgagaactgcaagttgaactgatcgatcgatttggtttattacctgatgca
gccaaaaatctctttagtgtgcaacaactcaaacaaactgcgactcaattaggacttaaa
cgcgttgaagctggcaatacaactggcatgatcgaatttagccaacaatccagtgttgac
ccaagttatcttgtggcattgttacaaaaagccaacaaccaataccaaatggatggaccc
actcgcttaaaattcaatgtgcaaagtgtagatcgtcgagaaaaaatggaacagatcaaa
caacttctcaatgacttcgctaaccaccaactaccggaagcccactatgcttag
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