Clostridioides difficile R20291: CDR20291_0384
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Entry
CDR20291_0384 CDS
T00998
Symbol
rocR
Name
(GenBank) putative arginine utilization sigma-54 dependent regulatory protein
KO
K06714
arginine utilization regulatory protein
Organism
cdl
Clostridioides difficile R20291
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cdl03000
]
CDR20291_0384 (rocR)
Transcription factors [BR:
cdl03000
]
Prokaryotic type
Helix-turn-helix
Other families
CDR20291_0384 (rocR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
PAS_9
AAA_3
PAS_4
Mg_chelatase
PAS
VF530
UPF0175
PAS_10
Motif
Other DBs
NCBI-ProteinID:
CBE02131
UniProt:
A0A9R0CDC2
LinkDB
All DBs
Position
460831..462204
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AA seq
457 aa
AA seq
DB search
MNEILENIDEGVHFVNKDGKTIIYNNSVQKMEKMNRHDILANSFFDIVNKMKINRSTLLE
VLEKREVIKDNIQKYLDKNGKEITAINTTIPIDIKGEFVGALEISKNMTTIENLLNRNYK
KNLVNKVSSRQKKGYEFDDILGESNLIKEAIEKSKKACKSDASVFIYGETGTGKELFSQS
IHYGSNRRNYPFIAQNCAALPESLFEGILFGTSKGGFTGAIDRPGLFEQANKGTLLLDEI
NSMPIMLQAKLLRVLQEGYVRRVGGTKDIPIDVRIIATTNESPKVILNEHKMRKDLYYRL
NIIHIKIPPLRDRKEDILLLCKKFISKYNKKLNKKVVGISDEAIKILKNYDWQGNIRELE
NIIYCTMSMMEDEVQIETSMINLNDYYNLKENKESNNYSLNDLEGKTLSKIISEIEEKYI
YESLEKASYNITKAASILGMNRQNLQYKIKKYNIKIL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatattggaaaatattgatgaaggggtacattttgttaataaagacgggaaa
actataatctacaataattctgtacaaaaaatggaaaaaatgaacagacacgatatttta
gccaattcattttttgatatagtcaacaaaatgaaaataaacaggagtacactattagaa
gttttggaaaaaagggaagttatcaaagacaatattcaaaaatatctggacaaaaatgga
aaagagataacagcaattaatactacaataccaattgatattaaaggcgagtttgtaggg
gcacttgaaatatcaaagaatatgacaacgatagaaaatttactaaacagaaattataaa
aaaaatttagtcaataaagttagtagtagacaaaaaaagggttatgaatttgatgatatt
ttaggggaaagtaatttgattaaagaagcaatagaaaaatctaagaaagcttgcaagtct
gatgcttcagtatttatatacggtgaaactggaacgggtaaagagttatttagccagtcc
attcattatggaagtaataggagaaactatccatttatagcacaaaattgtgcggctttg
ccggaatcactattcgaaggtatcctttttggaactagcaagggaggatttacaggagca
atagataggccaggcttatttgaacaagctaacaaagggacattgttattggatgagata
aattccatgcctattatgttacaggctaaactattaagggttttacaagaaggttatgta
agaagggttggaggaactaaggatatacctatagatgtaagaattattgcaacgacaaat
gaaagtccaaaggtaattttaaacgagcataaaatgcgaaaagatttatattataggctt
aacataattcatataaaaattcctcctcttagagatagaaaagaggacatacttctattg
tgcaaaaaatttatttcaaagtataataaaaagttaaataaaaaagtggtaggaatttca
gatgaagctattaaaattttaaaaaattacgattggcaaggtaacataagagagctagaa
aacataatttattgtactatgagtatgatggaagatgaggtacaaatagaaacaagtatg
attaatctaaacgactattacaatcttaaagagaataaagagagtaacaattattcttta
aacgatttggagggcaaaacacttagtaagattatcagtgagatagaagaaaagtatata
tatgaatcattagaaaaggcatcgtacaatataactaaagctgcatcaattttaggtatg
aataggcaaaatttacagtataaaataaaaaaatataatatcaaaatattataa
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