Castellaniella defragrans: BN940_08436
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Entry
BN940_08436 CDS
T03058
Name
(GenBank) putative sigma-54-dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
cdn
Castellaniella defragrans
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cdn03000
]
BN940_08436
Transcription factors [BR:
cdn03000
]
Prokaryotic type
Helix-turn-helix
Other families
BN940_08436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
HTH_8
Sigma54_activ_2
GAF
AAA_5
HTH_30
GAF_2
HTH_29
HTH_28
HTH_23
AAA
HTH_psq
PAS_4
AAA_2
Mg_chelatase
HTH_1
HTH_Tnp_ISL3
AAA_16
nSTAND3
UBA
HTH_Tnp_1
HTH_38
HTH_7
HOIP-UBA
HYPK_UBA
HTH_50
Motif
Other DBs
NCBI-ProteinID:
CDM24150
UniProt:
W8X938
LinkDB
All DBs
Position
complement(1800869..1802821)
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AA seq
650 aa
AA seq
DB search
MQTPPTIHLAPGARPQAAARIHQSWARCADLDPALLADPNPLPRADLDLRREAHRHLLRA
AEPSLGALGTLADSAHSVVLLADPSGLILHERGSRSFQDKARRVALQPGVSWAEPLRGTN
AIGTALHDGRAVRIHGAEHFLACNSILSCHAAPIFSATGEILGILDLSGPADDMRDTMLA
LVQRMARGIADQILGESPLRRLDFRLGRGPEDDGHALLLLDDDARIAGANEAALRALDAD
WGRLIGTPCAQWIDGPLRSRDAPLHRHDGQPLTGRLIGPPPAPARPAPAPPATARPPAPA
PVRPTARPLPEPDAVSSPLLDQAVRALDTGLAVLLCGETGTGKEVLSRHIHARSVWRTGP
FVAINCAALPEHLVESELFGYEPGAFTGARREGARGLLRQAQGGVLFLDEIGDMPLALQT
RLLRVLQEREVQPLGSDKRVPLEFGLISASHQDLKSLVAQGRFRADLYYRLQDMPLQLPP
LRARPDLAAFIGDAYRALEGHLAGDALAALARHDWPGNYRELFSVLRRLRCQHPGPAPVA
ARDLPGDIAPPACAPAGPDGIGPGGIGADGIGPIALADAFRGGAPAARTGAGIGTGLSDT
DTGATPPAAGLRALERQAIEQALRACQGNVSRAARRLGIHRSTLYRKLKG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaccgcccacgatccacctggcgccgggcgcccgcccgcaggcggcggcgcgc
atccatcagtcctgggcgcgctgcgccgacctcgatcccgcattgctggccgatcccaat
cccctgccccgcgccgacctggacctgcgccgcgaggcccaccggcacctgttgcgcgcc
gccgagcccagcctgggggcgctgggcacgctggcggattcggcgcacagcgtcgtgctg
ctggccgaccccagcggcctgatcctgcacgaacgcggcagccgcagcttccaggacaag
gcgcgccgcgtggcgctgcagcccggcgtcagctgggccgagcccctgcgcggcaccaac
gccatcggcacggccctgcacgacggccgcgccgtgcgcatccacggcgcggagcatttc
ctcgcctgcaacagcatcctcagctgccacgccgcgcccatcttctcggccaccggcgag
atcctcggcatcctcgacctgtccggcccggccgacgacatgcgcgacaccatgctggcc
ctggtgcagcgcatggcgcggggcatcgccgaccagatcctgggcgaaagcccgctgcgc
cggctggatttccgcctcggccgggggccggaggacgacggccacgccctgctgctgctg
gacgacgatgcccgcatcgccggcgccaacgaggccgccctgcgcgcgctggacgccgac
tggggccgcctgatcggcacgccctgcgcgcaatggatcgacgggccgctgcgcagccgc
gacgcgccgctgcaccgccacgacggccagcccctgaccggccgcctgatcgggccgccg
cccgcgccggcacgccccgcgcccgcgccgccggcaacggcgcggcccccggccccggcg
cccgtccgccccacggcccgtcccctgcccgagcccgacgcggtcagcagccccctgctg
gaccaggccgtgcgcgccctggacacgggcctggcggtcctgctgtgcggcgagaccggc
acgggcaaggaagtcctgtcgcgccacatccacgcccgcagcgtctggcgcaccgggccc
ttcgtcgccatcaactgcgccgccctgcctgagcacctggtcgaatccgaactcttcggc
tacgagccgggcgccttcaccggcgcgcggcgcgaaggcgcgcgcggcctgctgcggcag
gcgcagggcggtgtgctgttcctggacgagatcggcgacatgccgctggcgctgcagacc
cggctgctgcgggtcctgcaggagcgcgaggtccagccgctgggctcggacaagcgcgtg
cccctggaattcggcctgatcagcgccagccaccaggacttgaagtcactggtggcgcag
ggccggttccgcgccgacctgtactaccgcctgcaggacatgccgctgcagctgccgccg
ctgcgcgcgcggcccgacctggcggccttcatcggcgacgcctaccgggccctggagggc
cacctggccggcgatgcgctggccgcgctggcccgccacgactggccgggcaattaccgg
gaactgttcagcgtgctgcgccggctgcgctgccagcacccggggcccgcgcccgtcgcg
gcccgcgacctgcccggagacatcgcgccgccggcctgcgcgcccgccggtccagacggc
atcggcccaggcggcatcggtgcggacggcatcggtccaatcgccctcgccgatgcgttc
cgcggcggggcgccggcggcccggaccggtgccggcatcggcaccggcctgtcggacacg
gacacgggtgcgaccccgccggccgccggcctgcgcgcgctggaacgccaggccatcgaa
caggccctgcgcgcctgccagggcaacgtcagccgcgccgcgcgccgcctgggcatccac
cgcagcacgctgtaccgcaagctgaaaggctga
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