Corynebacterium doosanense: CDOO_04690
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Entry
CDOO_04690 CDS
T03413
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdo
Corynebacterium doosanense
Pathway
cdo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDOO_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdo03400
]
CDOO_04690
Enzymes [BR:
cdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDOO_04690
DNA repair and recombination proteins [BR:
cdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CDOO_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AIT60625
UniProt:
A0A097IES2
LinkDB
All DBs
Position
911789..915385
Genome browser
AA seq
1198 aa
AA seq
DB search
MLAGLLHTISSDPALKGLTKAVGDKRLHLTAITQARPWALATLATQAPVLVVTATGREAE
DLAAELSAMLGDSVGLFPSWETLPHERLSPGADIVGRRAKILNHLQDYRVVVTAARGLSQ
PVLEQAAGRKPVILKEGAEFDFSELTEELVFRAYSHVDMVAKRGEFAVRGGILDVFPTTH
DLPVRVEFWGDEITEMRQFSVADQRAIPEVETGAVEVYPARELLVDDRVAARARELLVKH
PGNPALVELLTKVGERTSAEGMEALIPVLTDTRMVTVDTLMAHGTHTVIIDPEKVRRRIA
DLEATDTEFLEAGWEAAAMGATGPVVVEGLDVSASSYRSYESLEAGAPGPWWTVAAPGMF
ESEETATLPLDYQSGPTPRGDLKEIEAMMATLKVHVNDGGRAAFVAPTEAAIKRMTERFR
ENGIPVKVATPGWQPSTGEITLYEALSHAGLMFPRIPLVVITETDLTGNRVGDVAGAKRK
PAKRRNKVDPLALQTGDFVVHETHGIGKFLKMAEREIHAGDETSRREYIVLEYAASKRGQ
PADQLWVPMESLDLLSKYTGGESPTLSKMGGSDWKNTKKKARSAVREIAAELVELYAKRH
SAVGHQFAPDTPWQREMEDRFPFIETEDQMAAIEAIKEDMESTVPMDRVIVGDVGYGKTE
VAVRAAFKAVQDGMQVAVLVPTTLLAQQHYNTFSQRMDGFGLEIAELSRFTSTAEAKKIL
AGLADGSVDIVVGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALRSNVDILTMSA
TPIPRTLEMSMSGIREMTTMLTPPEDRHPILTYVGAYEDKQVAAAIRRELLRDGQVFFIH
NKVADIDSKARELRDLVPEARVVVAHGQMGEEQLEGTVQGFWNRDYDVLVCTTIVETGLD
IANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGTTLTETSYDRLATIAQN
NDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVETFKAMARGEVLD
ATDQGPKEIRIDLPVDAHIPEEYINSERLRLEIYRKIAESKNEDDLGAVVDEMVDRYGPV
PREVLSLLSVARLRHLARAVGISDVLVQGTRIKIHPAELPDSKQVRLKRLFPGATYRAAA
QAVQVPFPKAGRGAGQQNLRDADLLQWVADFLSQMFDAPKIAVSGASTEATKMVSVSE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccggactgctgcacacgatctccagtgacccggcgctgaaggggctgaccaag
gctgtcggcgacaagcggctccacctcaccgcgatcacgcaggcccgcccctgggcgctg
gccaccctggccacgcaggcgccggtcctcgtggtcaccgccaccgggcgggaggcggag
gatctcgccgccgagctcagcgcgatgctgggtgacagcgtcggcctcttcccctcctgg
gagaccctgccccacgagcgcctgtccccgggtgcggacatcgtgggccggcgcgcgaaa
atcctcaatcacctgcaggattaccgggtcgtggtcaccgcggcgcgtggcctgagccag
ccggtgctggagcaggcagcgggtcgcaagcccgtcatcctcaaggagggcgcggagttc
gatttctccgagctcaccgaggagctggtcttccgcgcctacagccacgtcgacatggtg
gccaagcgtggcgagttcgcagtgcgcggcggcatcctcgacgtcttccccaccacccac
gacctgccggtccgcgtggagttctggggcgatgagatcaccgagatgcgccagttctcc
gtcgccgaccagcgcgccatccccgaggtcgagaccggcgccgtcgaggtgtacccggcc
agggaattgcttgtcgacgaccgcgtggccgcccgtgcccgcgaactgctggtcaaacac
cccgggaacccggcgctggtggagctgctcaccaaggtgggggagcggacctcggcggag
ggcatggaggcactgattcccgtgctcacggacacgcgcatggtgaccgtcgatacgctc
atggcgcacgggacccacactgtcatcatcgacccggagaaggtgcgccggcgtatcgcc
gacctggaggcgacggacacggagttcctcgaggccggctgggaggccgcggcgatgggt
gcgactgggccggttgtcgtcgaggggctcgacgtttccgcgtcgtcctaccgttcctac
gagtcgctcgaggcgggcgcgccgggtccgtggtggaccgtggccgcgccgggcatgttc
gagtccgaggagacggcgacgctgccgctggactaccagtccgggccgactccgcgtggc
gatctcaaggagatcgaggccatgatggccaccctgaaggtgcacgtcaacgacggcgga
cgcgcggcgtttgtcgcccccaccgaggccgcgatcaaacgcatgaccgaacgtttccgg
gagaacggtatcccggtgaaggtcgccacgccgggctggcagccgtcgacaggcgaaatc
accctctacgaggccctgtcccacgcggggctgatgttccctcggatcccgctggtggtc
atcaccgagacggatctcacgggcaaccgcgtcggcgacgtcgccggggccaagcgcaag
cccgccaagcggcgcaacaaggtcgacccgctcgcgctgcagaccggggattttgtcgtg
catgagacacacggcatcggcaagttcctcaagatggccgagcgcgagatccacgccggc
gacgagaccagccggcgcgagtacatcgtgctggagtacgccgccagcaaacgcgggcag
cccgccgaccagctctgggtgcccatggagtcgctggacctgctgagcaagtacaccggc
ggtgagtccccgaccctgtccaagatgggcggatccgactggaagaacaccaagaagaag
gctcgctccgcggtgcgcgagatcgccgccgagcttgtcgagctctacgccaaacgccac
tccgcggtcggtcaccagttcgcgcccgacaccccctggcagcgggagatggaggaccgg
ttcccgttcatcgagacggaggatcagatggccgcgatcgaggccatcaaggaggacatg
gagtccaccgtgcccatggaccgggtcatcgtcggcgacgttggctacggcaagaccgag
gtcgccgtgcgcgccgcgttcaaagcggtgcaggacgggatgcaggtcgccgtgctcgtg
cccaccaccctgctggcgcagcagcactacaacacgttctcccagcgcatggacggtttc
ggcctggagatcgccgagctttcgcggttcacctcgacggccgaggcgaagaagatcctc
gccgggcttgccgacggctccgtcgacatcgtggtcggcacccaccgcctcctgcagacc
ggtgtgcagtggaagaacctcggcctcatcgtcgtggatgaggagcagcgcttcggcgtc
gaacacaaggagcacatcaaggcgctgcgctcgaacgtggacatcctcaccatgagtgcc
accccgatcccgcgcaccctggagatgagcatgtcgggcatccgcgagatgaccaccatg
ctcaccccgcccgaggaccgccaccccatcctcacctacgtcggcgcgtacgaggacaag
caggtcgccgcggccatcaggcgggagttgcttcgcgacggtcaggtgttcttcatccac
aacaaagtcgcggacatcgactcgaaggcccgggaactgcgtgatctcgtccccgaggcg
cgtgtcgtggtcgcgcacgggcagatgggggaggagcagctcgagggcaccgtccagggg
ttctggaaccgtgactatgacgtgctcgtgtgcaccaccatcgtcgagacgggcctggac
atcgccaacgccaacaccctcatcgtggagaacgcccaccacatgggcctgtcgcagctg
caccagctgcgcgggcgcgtcggccgttcccgcgaacgcggttacgcctacttcctctac
cccaagggcacgacgctgacggagacctcctacgaccggctggccaccatcgcgcagaac
aacgacctcggcgcgggcatggccgtggccatgaaggacctggagatgcgcggcgcgggc
aacgtgctcggcgcccagcagtccggccacatcgccggggtggggttcgacctctacgtt
cgcctcgtcggcgaggccgtggaaaccttcaaggcgatggcgcgcggagaggtcctcgat
gccaccgaccagggccccaaggagatccgcatcgatcttcccgtcgacgcccacatcccc
gaggagtacatcaactccgaacgactgcgcctggagatctaccgcaagatcgccgagtcc
aagaacgaggacgacctcggtgccgtggtcgacgagatggtcgaccgctacggccccgtc
cccagggaagtgctcagcctgctcagcgtggcccggctgcgccacctcgcccgggcggtg
ggcatctccgacgtgctggtgcagggcacccgcatcaagatccaccccgcagagctgccg
gactccaagcaggtgcgcctcaagcgcctcttcccgggcgcgacctaccgcgccgcggcc
caggccgtgcaggtgcccttccccaaggccgggcgcggcgccgggcagcagaacctgcgc
gacgccgacctgctgcagtgggtggcggacttcctctcgcagatgtttgacgccccgaag
attgcagtctccggggcgtcgaccgaggccacgaagatggtctcggtcagcgagtga
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