Cellulomonas dongxiuzhuiae: KKR89_04445
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Entry
KKR89_04445 CDS
T08574
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdon
Cellulomonas dongxiuzhuiae
Pathway
cdon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KKR89_04445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdon03400
]
KKR89_04445 (mfd)
Enzymes [BR:
cdon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KKR89_04445 (mfd)
DNA repair and recombination proteins [BR:
cdon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KKR89_04445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
LSDAT_prok
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QWC17746
LinkDB
All DBs
Position
982690..986331
Genome browser
AA seq
1213 aa
AA seq
DB search
MDLTGILPALLADPAAAEAVASVRARGELDVVGPAGIRPPLLAALAGAHATARDAASGSA
GRPLVVVTATGRDADELAGALRCYLPDDDVAVLPSWETLPHERLSPRSDTVARRLAVFRR
LAHPDPEPGPSGPVRVLVMPVRALLQPVVEGLGELVPVEVHTGDTVDLEDLAQRLVDAAY
TRVDMVERRGEFAVRGGILDVFPPIEDHPLRIELWGEEVEEIRWFSVADQRSLEVADHGL
WAPPCREILLTDAVRARAAALREQLPGALDMLDRLAEGIAVEGMESLAPVLVERMVPVLD
LVPDDSLLVVVDPERVRRRAHDLVATTREFLEAAWTSAAAGAAVPLDLSAASFASFAEVR
ALAAVRSLGWWTLSGFTLDADAVTGEGPADGPSADVDVRTLVVGAREVERYRGEVARAVE
DVRRLQHDGWRLVLATDGHGPAQRMVEQLKAADVPARLVATVPDEPEGGVVLVTPAPLGP
GFVHEALHLAVFSESDLTGRAGSSTRDMRRMPSRRRNVVDPLQLRPGDFVVHEQHGVGRF
VELVQRTIGSGASAATREYLVVEYASSKRGQPGDRLYVPTDQLDQVTKYVGGEAPTLNRM
GGSDWQKTKGRARKAVKEIAAELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETPDQ
LATIDEVKQDMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
IDTFTERYAPYPVTVRALSRFQSAKESAEVVEGLADGSVDVVIGTHRLITGSVRFKDLGL
VIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHP
VLTFVGPYEEKQISAAIRRELLREGQVFFVHNKVESIERVASRLNELVPEARIAVAHGKM
GEHRLEQVIVDFWEKKFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQLRGRVGR
GRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNLLGGEQSG
HIEGVGFDLYVRMVGEAVASFRGDAAEEQPDVTIELPVDAHVPHDYIAHERLRLEAYRKI
AAATDATTLREVHAELVDRYGPVPQAVDNLFEVAQFRLHVRNAGLADVTAQGRFVRFAPV
ALPESAQLRLKRLYPGSVLKPAVRTVLVPFPTTARVGGKPLHGREVMTWARQFIDAIVLG
DVAAAAAAGTSAR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaccggaatccttcccgccctgctcgccgaccccgccgccgcggaggctgtc
gcgtccgtccgcgcacgcggcgagctcgacgtcgtcggcccggccggcatccgcccgccg
ctgctggccgcgctcgcgggcgcgcacgccacggcgcgggacgcggcgtcgggcagcgcg
ggccgcccgctggtcgtggtcaccgccaccggccgtgacgccgacgagctcgcgggcgcg
ctgcgctgctacctgcccgacgacgacgtcgcggtcctgcccagctgggagacgctgccg
cacgagcggctgagccctcgctcggacacggtcgcgcgccggctggcggtcttccgccgc
ctggcgcaccccgatccggagccagggccgtccggcccggtgcgggtcctcgtcatgccc
gtgcgcgctctgctgcagccggtcgtcgagggtctcggcgagctggtgccggtcgaggtc
cacaccggtgacacggtggacctcgaggacctcgcccagcggctcgtcgacgcggcgtac
acgcgcgtcgacatggtcgagcggcgcggcgagttcgccgtgcgaggcggcatcctcgac
gtcttcccgcccatcgaggaccacccgctgcgcatcgagctgtggggcgaggaggtcgag
gagatccgctggttctctgtcgccgaccagcgcagcctcgaggtcgccgaccacggcctg
tgggcgccaccgtgccgcgagatcctgctgacggacgcggtgcgtgcgcgtgccgcggcc
ctgcgcgagcagctgcccggggccctggacatgctggaccgcctcgccgagggcatcgcg
gtcgagggcatggagtccctcgcgcccgtcctcgtcgagcggatggtgccggtgctcgac
ctcgtgcccgacgactccctgctggtggtcgtcgaccccgagcgtgtgcgccgccgcgcg
cacgacctggtcgcgacgacgcgggagttcctcgaggcggcgtggacgtcggcggctgcc
ggtgccgccgtcccgctcgacctgtccgcagcgtccttcgcgtccttcgcggaggtccgc
gccctggcggccgtccggtccctcgggtggtggacgctgtcgggcttcacgctcgacgcc
gacgccgtgacgggcgagggcccggcggacgggccgtccgccgacgtcgacgtgcgcacg
ctggtcgtcggcgcgcgcgaggtcgagcggtaccgcggcgaggtcgcacgcgccgtcgag
gacgtccggcggctgcagcacgacgggtggcggctcgtgctggcgaccgacggccacggc
ccggcgcagcgcatggtggagcagctcaaggccgcggacgtcccggcgcgcctggtcgcg
acggtgccggacgagccggagggcggggtcgtgctggtcacgcccgccccgctcgggccc
gggttcgtccacgaggccctgcacctggccgtgttcagcgagtccgacctcacgggacgc
gccgggtccagcacgcgcgacatgcgccgcatgccgagccggcggcgcaacgtcgtcgac
cccctgcagctgcgtccgggcgacttcgtcgtgcacgagcagcacggcgtcgggcggttc
gtcgagctcgtgcagcgcacgatcggctcgggtgcgtccgcggcgacccgcgagtacctc
gtcgtcgagtacgcgtcgagcaagcgcggccagccgggggaccggctgtacgtgccgacc
gaccagctcgaccaggtcaccaagtacgtcggcggtgaggcgcccacgctcaaccgcatg
ggcggctcggactggcagaagacgaagggccgtgcccgcaaggccgtcaaggagatcgcg
gccgagctcatccgcctgtactcggcgcgcatggcgacgcccgggcacgccttcgggccg
gacacgccctggcagcgggagctggaggacgcgttcgcgtacgtcgagacgcccgaccag
ctcgccacgatcgacgaggtcaagcaggacatggagaagacggtccccatggaccgcctg
gtctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggccttcaaggcc
gtgcaggacggcaagcaggtcgccgtcctggtccccacgacgctgctcgtgcagcagcac
atcgacacgttcaccgagcggtacgcgccgtacccggtgaccgtccgggcgctgtcgcgg
ttccagtcggccaaggagtccgcggaggtcgtcgagggcctcgccgacgggtccgtcgac
gtcgtcatcggcacgcaccgcctcatcacgggcagcgtccggttcaaggacctggggctc
gtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaaggcgctg
cgcaccaacgtcgacgtcctggcgatgagcgccacgcccatcccgcgcacgctcgagatg
gccgtgacgggcatccgcgagatgtcgacgctcgcgacgccgcccgaggagcgccacccg
gtcctgacgttcgtcggcccgtacgaggagaagcagatctccgcggcgatccgccgcgag
ctgctgcgcgaggggcaggtcttcttcgtgcacaacaaggtcgagtcgatcgagcgcgtg
gcgtcgcggctcaacgagctcgtgcccgaggcccgcatcgcggtcgcccacggcaagatg
ggcgagcaccggctcgagcaggtcatcgtcgacttctgggagaagaagttcgacgtcctg
gtctgcacgacgatcgtcgagacgggcctggacatctccaacgccaacaccctgatcctc
gagcgcgccgaccggctgggcctgtcacagctgcaccagctgcgcgggcgcgtcgggcgt
gggcgggagcgggcgtacgcgtacttcctctacccgcccgaggtgccgctcaccgagacg
gcgcacgaccggctgcagaccatcgcggcgcacaccgacctcggggccggcatggcggtg
gcgatgaaggacctcgagatccgcggtgcgggcaacctgctgggcggtgagcagtccggc
cacatcgagggcgtcgggttcgacctgtacgtgcgcatggtcggtgaggccgtcgcgtcg
ttccggggcgacgccgccgaggagcagccggacgtcacgatcgagctgcccgtcgacgcg
cacgtcccgcacgactacatcgcgcacgagcggctgcgcctcgaggcgtaccgcaagatc
gcggccgcgacggacgcgaccacgctgcgcgaggtgcacgcggagctggtcgaccgctac
ggccccgtgccgcaggccgtggacaacctcttcgaggtcgcgcagttccgcctgcacgtg
cggaacgccgggctggcggacgtcacggcgcagggccggttcgtgcgcttcgcgcccgtc
gcgctgcccgagtcggcgcagctgcgcctcaagcggctctacccgggctcggtcctcaag
cccgcggtgcgcacggtgctcgtgccgttcccgaccacggcccgcgtcggcggcaagccg
ctgcacggccgtgaggtcatgacgtgggcgcgccagttcatcgacgcgatcgtgctcggg
gacgtcgccgccgcggcggcggccggcacctcggcccggtga
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