Corynebacterium diphtheriae VA01: CDVA01_0785
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Entry
CDVA01_0785 CDS
T01702
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cdv
Corynebacterium diphtheriae VA01
Pathway
cdv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDVA01_0785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdv03400
]
CDVA01_0785 (mfd)
Enzymes [BR:
cdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDVA01_0785 (mfd)
DNA repair and recombination proteins [BR:
cdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CDVA01_0785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEX83054
LinkDB
All DBs
Position
823724..827524
Genome browser
AA seq
1266 aa
AA seq
DB search
MFVPDKSVPAAQPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGIDQARPWAIAALAHR
APVLVVTATGREAEDLSAELRAMLGEKVAWFPAWETLPHERLSPGADIAGQRARILSHIA
DYSVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDLVAKRGEF
ATRGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFPARELPIT
PEIAQRAAELAVKFQGNPTLQELLAKISESIPSDGMEALIPALVDQPMVTLAELMPENTH
IVVVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADGPVATRGLDLDASSYRSYESLEKT
AQKHTMPWWTFAPPGMFEASDGDTLPLEFEPGPTPRGDLEQIDQMMALLLAHTRDGGAAA
FIAPAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGLVFPKVRKQPGKP
ALPLVVITETDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTE
RVIQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAID
AVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFE
ERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELL
EQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVY
RKLAASANDKDLALVVEEMKDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKL
HPVELTDSKQVRLKRLAPSATYRAAAKAIQLPFPKEGAKVTDKQLRDVELLQWVADFIAE
MFEHDRVSVTGEKLPDKVISVAQPMSPAAARAERVAQRAAVRRQARNDDEDYEDRREARR
RKYRMR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgcctgataaatccgtgcctgcggcacaaccaccaatgcttgctggtttgctc
aaagttgctgccaccgatccaaagatcaagggactgcttcagcatgtaggcgaaccccat
ctgcatatcacaggcatcgatcaggcacggccgtgggcgattgctgcgttggcacaccgc
gccccagtgcttgtggtgacggctacggggcgtgaggcagaggacttatctgctgagctg
cgtgccatgttgggggaaaaggtggcgtggtttccggcatgggagacgttgccgcatgag
cgcttgagcccaggtgctgatattgctggtcagcgagcccgtattttgtcgcatattgca
gactattcggtggtggtgacggctgcgcgtggcttcagccagccgattgtttcacaggtt
gctggtcgagatcctttggtgttggaagttgattccgaatgtagtttggaagaagcaaca
cagcagttggtgtttcgggcttatcaccatgtggatttggtggctaagcgaggtgaattt
gcaacgcgcggcggcattttggatgtgtttcccacaacggctcagcatccagtacgtgtg
gagttttggggcgatgaggtttcagaaatccgtggattccaggttgctgatcagcgtgcg
attcctgattcggatgtgtcacgggtagaagttttccccgctagagaactgcctattact
ccagaaattgcgcaacgtgcagctgagctcgctgtgaagtttcaaggaaacccaacgctg
caggagctactggctaaaatttctgaatctatcccgtcagatggcatggaggccttgata
cccgcgttggttgatcaacccatggtcacccttgctgagcttatgcccgaaaacacccat
attgtggtggtcgggccggaaaagattcgtactcgtgtagcagatcttcaagctacggat
gccgagtttttggccgctggttgggaggctgctgctatgggcgctgatggtcccgtggca
acgcgtggcctcgatcttgatgccagctcgtatcgctcctatgaatcgctggaaaagaca
gcacagaagcacaccatgccatggtggacttttgcgccacctggcatgtttgaagcctca
gacggcgacaccctcccgttggaatttgagccgggacctacaccgcgtggcgatctcgaa
cagatcgatcagatgatggctctgctacttgcacatacgcgcgacggcggtgcggcagcc
tttattgctcctgctcaaggcgctatcaagcgcatggtggaacgctttaaggaacaagga
atccccacgaaggtggcaacacctggctggcagccaaccttgggtgaagtgacactgtat
caggcgatgagccatgcaggtttggtatttcccaaggtgcgaaagcaacctggaaaaccc
gcattgccgctggtggtgatcacagaaactgaccttaccggtaaccgagttggtgacatt
gctggtgcgaagcgccgcccagccaagcgccgccaccgtgtggacccgcttgctttgaaa
accggcgactatgtggtccatgaaacccatggcatcggtcggttcctcaagatgaccgag
cgtgtgatccagtccggtgatgagacttcgcggcgcgaatacatcgtgttggaatacgcg
gcgtcgaaacgcgggcagccagcagatcaactgtatgtgcctatggattccctcgacatg
ctgagtaaatatgtcggcggtgaaaaacctaccctttctaaaatgggcggctcggactgg
aagaacaccaaaaagaaagctcgcgcagcggtgcgagaaatcgctggtgaactagtcgag
ctgtatgcgaagcggcaatccgcgccggggcatgcgtttgcacctgattccccgtggcag
cacgagatggaagataacttcccctacgtggaaaccgaagatcagatgcttgctattgac
gcggtgaaagcggacatggagaagccttcgccaatggaccgcgtggtggtcggcgacgta
ggttatggcaaaaccgaagttgctgtgcgtgcggcatttaaggcggtacaggatggtcgt
caagtcgtggtgcttgttcctacaaccttgctggcccagcagcatttgagcacctttgaa
gaacgcatggcaggattccccgtgacgatcaagggcctgagccgttttacctctcctagt
gaatcaaaggagatccttaaagggcttgccgacggctccgttgacatcgtgatcggtacg
caccgcctgctgcaaacaggtgtgcagtggaaaaatctgggccttgtcatcgtggacgag
gagcagcgttttggtgttgagcataaagaacacatcaaagcattacgtacccatgtggac
gtgctcacgatgtcggcaactccgatcccgcgcactttggagatgtcgatggccggtatc
cgtgagatgtcgaccattttgaccccgccagaagatcgacacccgattttgacctacgtg
ggcgcccaagaagataaacaagtagcggcagccattaggcgtgagctgcttcgtgatggc
caagttttctatgtgcataacaaagtctctgacatcgagaaaaaggctcgggaactgcgt
gaactcgtaccggaagcacgcattgtggtggcgcatgggcaaatgagcgaagagttacta
gagcaaactgttcagggattctgggatcgtgaatacgatgttctggtctgtaccacgatt
gttgaaaccggcctcgacatcgcgaacgccaacacgcttatcgtggaaaatgctcaccac
atgggtctgtcacagctgcaccagttgcgtgggcgcgtagggcgttcccgcgagcggggt
tacgcttacttcttgtatcccaagggtgccacgttgacggaaaactcctatgaccgtctt
gctacgatcgcgcaaaacaacgatcttggtgctggtatggcggtggccatgaaagacttg
gaaatgcgcggtgccggcaatgtgttgggcgcgcaacagtctggtcatatcgccggagtg
ggctttgacctgtatgttcgtttggtgggagaagcggtcgaggcataccgtgcgctagca
gatggcaaggttgccgatgccacggagcaggggccgaaggagatccgcatcgatttgcct
gtcgacgcccacatccccgaggactacatcaactcagaacgattgcgcctcgaggtctat
cgtaaacttgccgcctcggccaatgataaggacttggcgcttgtggttgaggaaatgaaa
gaccgcttcggtcccgttccccacgaggtaaagcggctgctggcggtgtcacgcctgcgt
cacttagcacgcgcgacagggctaagcgatattggtgtgcagggcacacgcatcaagctg
cacccagtggaattgactgattctaagcaggtgcgtctcaagcgtctggcaccgtctgct
acctatcgcgcggctgctaaggccatccagttgccatttcctaaagaaggcgcgaaggta
acggacaaacagcttcgcgatgttgaactattgcagtgggttgctgactttatagcggag
atgtttgaacacgatcgcgtatctgtgacaggggagaagctgccggataaagtgatctcg
gtggcgcagcccatgagccctgctgcggcgcgagcggagcgcgtagcgcaacgggcagcg
gtgcgccgacaagcgcgaaatgacgatgaggactacgaagatcgtagagaagcgcgacgt
aggaaataccgtatgcgttaa
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