Cardinium endosymbiont of Sogatella furcifera: CE557_108
Help
Entry
CE557_108 CDS
T05597
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cec
Cardinium endosymbiont of Sogatella furcifera
Pathway
cec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CE557_108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cec03400
]
CE557_108
Enzymes [BR:
cec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CE557_108
DNA repair and recombination proteins [BR:
cec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CE557_108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AXI23950
UniProt:
A0A345PMW6
LinkDB
All DBs
Position
1:complement(147554..150799)
Genome browser
AA seq
1081 aa
AA seq
DB search
MQINDFIERYQKQEVITKLTDYLKQDPQDIHLQGMQGSLDALLIAALQRNCNRVQLIILE
NKEEALAMYGDLTHLAHSVLLLPSLAQKEDTSIQNKRSAIIQAIRDGRSTPLIVTHIAAL
LEKIPDPSTMGCRIEVGQTLSLQTLESMLEGFTKVDFVYSSGQFAIRGGIVDIYTVPQSF
PYRMELWGGQVSTIRIFDPKDQKSFKKTNAATIVSNAKIKTKSQYNPIFFSTCLPKGSCI
WLKNKQKLAVQTTTSNDTSTLETWKSFIASIVPFHQILFGESTGSDSALILSYNSEKQPC
FQQNFNLLADDLYKREQQGYEVYITAPAAGQFTRLTTILEAKAPPTTFKPLLLSLREGYI
DHTAKIVCYSDHQIFNRYYQYQPPKQHAPTETLLVDAYRRLEIGDYVVHNDYGIGRFSGL
HSLTIHNQKQEAIRLIYKNNDMVYVNVHELYKISKYTSKDGTTPGMHTLGTSAWQRKKSS
VKQQIKDIAKELITLYAQRKKTMGFAFKADTVLDAELAASFCYEETPDQAAAIAAVKADM
ERPTPMDRLVCGDVGFGKTEIAIRAAFKAAVQGKQVAILVPTTILALQHYNSFIDRLAGL
PIHVSYINRFKTKQEVEQTLAHTASGKVDILIGTHKLLTNGVKFKDLGLLIIDEEQKFGV
RAKEKLKKMRLNVDTLTLTATPIPRTLHFSLMGARDLSMLTTPPTNRLPVQTKLHRFDDK
LIKEAIEDELARGGQVFFVHNRVRNINAIAQNLSDLLPAARICVAHGQMGGSMLEEKILQ
FIVGRYDILVATSIIESGIDMPNVNTIIINDSHLLGLSDLHQMRGRVGRSHVQAFCYLLI
PEEVTLTPEAKLRLTALEECAALGDGFKLAMRDLDIRGAGDLLGAAQSGFISDIGFETYC
KILEEAVDEVKHNDFKTLFNTKPLYTECSIETDCEALLPPEYVQSTTQRMTLYTRLNALK
NNDHLTNFKEELIDRFGPLPTATETLLETVQLRWEAERIGFQKISFKGQRLHCYLDADAQ
KRNLNMWEHIMRYMQAHPTCCQLKKLGQNLMLIITGKIDSVLAAKQLLATIGTTDGNGCS
S
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
ttgcagatcaacgattttatagaacggtatcaaaaacaagaagttataaccaagcttaca
gactacctaaaacaggatccgcaagatatacacttacaaggtatgcaaggcagtttagat
gcactactgattgcagccctgcaaagaaattgcaatcgggtacagcttatcatactggaa
aacaaggaagaagcattggctatgtatggagatttaacccatttggcccattcggtgctg
ctactccccagcttggcacaaaaagaggatacctctattcaaaataaacgatctgctatc
atacaggccatacgtgatggtaggtctactccattaatcgtcacccatatagctgcactg
ttggaaaaaatcccagatccatccactatgggttgcaggatagaggtaggccaaacgcta
tcactccaaactttggaaagcatgctagaaggttttacaaaagtagattttgtctatagt
tcaggtcagtttgctatacgtggtggcattgttgatatttatacggtgcctcaatcattt
ccctaccgaatggaactatggggaggccaagtttctaccattcgcatctttgaccctaaa
gaccaaaaatcttttaaaaagacaaatgcagcaactattgtatccaacgcaaaaataaaa
accaaaagccagtacaatcctatcttcttttcaacttgtttacccaaaggcagttgtatt
tggctaaaaaataaacaaaagctagcagtacaaacgaccacatccaacgatacctctacc
ctagagacttggaaaagctttatagcatctattgtcccctttcatcagattctatttggg
gaatccactggttcagatagtgccctaatattatcatataactctgaaaaacaaccatgt
tttcaacaaaactttaatctgctagcggatgacctctacaaaagagagcagcagggctat
gaggtatatattacagcacctgctgcaggtcaatttacacgactgactactattttagaa
gccaaagcgcccccgacaacttttaagccattgctactgagtttacgggaaggatatata
gatcatacagctaaaatagtatgttacagtgatcatcaaatttttaataggtattatcag
taccaaccacccaagcagcatgccccaacggaaaccttactcgtcgatgcctatagaagg
ctagaaattggtgattatgtggtccataatgactacggaattggccgattttctggactc
cattccttaaccatccataaccagaaacaggaagccattcgcctgatctataaaaacaac
gacatggtgtacgtaaatgtacacgaactatataaaatcagcaaatataccagtaaagat
ggtacaacgcctggcatgcatacattaggaacttctgcatggcaacgcaaaaaaagcagc
gttaaacaacagatcaaagacattgccaaagaactgattaccctttatgcgcaacgcaaa
aaaacaatggggtttgcttttaaggcagatacggtactggatgcagagttagctgcttct
ttctgctatgaggaaaccccagaccaagctgccgccattgcggctgttaaagcagacatg
gagcgccccactcccatggatcgactcgtttgtggtgatgtgggatttggcaaaacagaa
atcgctattcgtgcagcttttaaagcagcggtacagggcaaacaagtagctatactcgta
cctactactattttagccctacaacactacaactcttttatcgataggctggctggttta
cccattcatgtcagttacatcaatcgctttaaaaccaaacaagaagtcgagcaaacgctt
gcccatacggcttctggtaaggtggatattttaataggtacacacaaactattgaccaat
ggtgtcaagtttaaagatttagggctgttgatcattgatgaagaacagaaatttggtgta
cgtgcaaaagaaaaattaaaaaagatgcggttgaatgtagatacactcaccttgaccgct
acgcctattccacggaccctccatttttcgctaatgggtgccagggatttaagtatgctc
actacccctcctaccaatagactgcctgttcaaacaaagttgcaccgctttgacgataag
ttgattaaagaagccatagaagatgaattagcccgtggggggcaagtcttttttgtgcac
aatagggtaagaaatatcaacgcgattgcacaaaatttatcagacctattgcctgcagca
cgcatctgtgtggcacatggccaaatgggcggatctatgttagaagagaaaatattgcag
tttatagtaggtcggtatgatatactggttgctactagtattatagaatctggcatagat
atgcccaatgtcaataccattatcattaatgacagccaccttttaggcctctctgattta
catcaaatgcgcggtagagtaggtcgttctcatgtgcaagctttttgctacctattgatt
ccagaagaagtaacccttacgccagaagcgaaactaaggctgaccgcattagaagagtgt
gcagcgttaggagatggttttaaactggctatgagggacctagacatacgtggtgcgggt
gatctgctcggtgcagcacaaagtggatttatatcggatattggttttgagacctattgt
aaaatattagaagaggcggtagatgaggtaaagcacaacgattttaaaacattgtttaac
actaaaccgctctataccgagtgttcgattgaaacagactgtgaagcgctgctaccacct
gaatatgtgcaaagtacaacgcaacgaatgacgctttatacaaggcttaatgcgcttaaa
aataacgaccaccttacaaattttaaagaagaattaatagatcgatttggtccattacct
actgctacagagactttattggaaacagtacaactccgatgggaggcagaacgcattggt
tttcaaaaaatttcatttaaaggtcagcggttacattgctacttagatgctgatgctcaa
aaaagaaatttaaacatgtgggagcatattatgcgttatatgcaagcccatccaacttgt
tgccaactcaaaaagttgggacagaatctaatgcttatcattactggaaaaatagatagt
gttcttgcagcaaagcagctactggccaccataggaaccacggacggaaatggttgtagt
agctaa
DBGET
integrated database retrieval system
