Cyanobacterium endosymbiont of Epithemia clementina: P3F56_00425
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Entry
P3F56_00425 CDS
T09382
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ceec
Cyanobacterium endosymbiont of Epithemia clementina
Pathway
ceec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ceec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P3F56_00425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ceec03400
]
P3F56_00425 (mfd)
Enzymes [BR:
ceec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P3F56_00425 (mfd)
DNA repair and recombination proteins [BR:
ceec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P3F56_00425 (mfd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGT67612
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Position
complement(119812..123303)
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AA seq
1163 aa
AA seq
DB search
MTFSSLIRTLQKSPLTKELLEKLKKIGYLGLTGIPRLPKGLVASALAQAENRSLLVVCAT
LEEAGRWAAQLEIMGWKTVDFYPTSEASPYESFNAESEMIWGQMQVLSSINSSLYIDNKL
AIVTTEKVLQPHLPPPDIFRSYCLNLQTGMTKSSQEIDKSLTKLGYERVSLVETEGQWSR
RGDIVDIFPVSLELPIRLEWFGDKLEKIRELDLATQRSLEKLDQVFLTPTSFDPIIAHTL
NEQHQSLETYFSIEEIEALKDNNYPEGMRRFLGIAFEKPASLIDYLEDNTICIFDELEQC
ECHSNRWLEYIEDNWQELGSPLPKIHRSFETSVKLAQKFPIIYLSELSESTDKTALDLSS
RPIPSIPHQFSKLAEILRGKREIYSGISLNKYLTWLVSAQPSRTVSLLEEHDCPAQFIPN
PRDYPGVEKYHTQGIAVALKYSGLAELTGFILPTFRVVVITDKEFFGQHVLASTGYIRKR
RRAASKQINLERLLPGDYVVHKSHGVGRFLKLESLATREYLVIQYYDGLLRIPADSVDSL
SRYYQTEDRPPELHKMTGKTWAKTKQKVRKTIKKLAVDLLNLYAKRSKQSGFVYPPDTPW
QEELEGSFPYQPTPDQLKAVQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKVVTSG
HKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDILQRLATGELDIVV
GTHKILGKTVKFKNLGLLIIDEEQRFGVNQKEKIKELKTQVDVLTLSATPIPRTLYMSLS
GIREMSLITTPPPSRRPIKTHLSSHNPDVIRTAIRNELDRGGQIFYVVPRVEGIEEVAGK
LQQMVSSAKIMVAHGQMNVNELEITMLEFNNGMGDILVCTTIIESGLDIPRVNTIIVEDS
QKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGEITETARKRLRALQEFSQLGSGYQLATR
DMEIRGVGNLLGAEQSGQMTAIGFELYMEMLQEAIKEIQGQEIPRVDETQVDLQLTAFIP
TSYIADTQQKMDAYRAVATANSKEDLEQIMVAWTDCYGKIPSSVKQLLQVIELKQIGKSL
GFSRIKTDGKQHVILETPMEEPAWKLLEENLPNYLQSRFVYSPKKVTVRGLGLSKPQKQL
ESLIEWLGKMKGALPQNGIEIAN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttccctaattcgtactctacaaaaatcacctctaactaaagaattatta
gagaaactaaaaaaaataggttatttgggattgacaggaattcctcgactccctaaaggc
ttagtcgcatcagcattagcacaagcagaaaatcgtagtttattagtagtttgtgcaacc
ctagaagaagcagggagatgggcggctcagttagagattatgggctggaaaactgtcgat
ttttatccaacttcagaagcgtctccttatgagtcttttaacgctgaatcagaaatgatt
tggggacaaatgcaagttttgtcaagcataaatagttcattatatattgataacaaatta
gctattgttactacagaaaaagttttacaaccccatttaccacctcctgacatttttcgg
tcttattgtttaaatttacaaacaggaatgactaaatcatctcaagaaattgataaatcg
ttaactaaattaggttatgaaagagtttctctagtagaaactgagggtcaatggagtaga
agaggtgatattgttgatattttcccagtttccttagaattacccattcgattagaatgg
tttggagataaattagagaaaattagagaattagatctagcaactcaacgttctttagaa
aaacttgatcaagtttttctaactcctacgagttttgatcctatcattgctcacactctt
aatgaacaacatcaatctttagaaacttatttctctatcgaagaaatagaggcattaaaa
gacaataattatcccgagggaatgagacgttttttaggaatagcttttgaaaaacctgct
tcattaatagattatttagaagataatactatttgtatttttgatgaattagaacaatgt
gagtgccatagtaatcgctggttagaatatatagaagataactggcaagaattaggatca
cctttaccaaagattcatcgttcttttgaaacctctgtaaaattagcccaaaaatttccc
attatttatctttcagagttatcagaaagcacagataaaactgcattagatttgtcaagt
cgtccaatacctagtatccctcatcagttctctaaattagcagaaatattacgaggaaaa
cgagagatttatagtggtatttctctaaataaatatttaacctggttggtttctgcccaa
ccctcccgaacagtttctttactagaagaacatgactgtccagctcaatttattccaaat
cctcgggattacccaggagttgaaaagtatcatactcaagggatagccgtagccttaaag
tattcaggcttagcggaattaacagggtttattctacctacttttcgggttgttgttatt
accgataaggagttttttggacagcatgttttagcctcgacaggatatattcgaaaacgt
cgtcgggctgcctctaaacaaataaacttagagcgactgcttccaggagattatgttgtt
cataaaagtcatggagttggtagatttttaaagctggaaagcctagcaactcgtgagtat
ttagttattcaatactatgatggtttgttgagaataccagcagattctgtggatagttta
tcccgctattatcaaactgaagatcgtcctccagaactccacaaaatgacaggaaaaacc
tgggcaaaaactaaacaaaaagttcgtaagacaattaaaaaattagcagttgatttatta
aatctctatgctaaacgctctaaacaatcaggatttgtttatcctcctgataccccttgg
caagaagaattagaaggttcttttccctatcaacctacacccgatcaactgaaagcagtt
caagatgtgaaaatcgatttagaaagtgaccgccctatggatcgattagtttgtggggat
gtaggctttggtaaaacagaagttgctgtcagagcaatttttaaagtcgttactagtgga
cataaacaggttgcactgcttgcaccaactacgattctgacgcaacaacattatcatacc
ctaaaggaaagatttgcgccctatccaattaatattggactactgaatcgttttcgtacc
acttcagagaaaaaggatatcttacaacggttagccacaggagaattagatatagttgta
ggaactcataaaattttgggaaaaaccgttaaattcaaaaacttaggcttattaattatt
gacgaagaacaaagatttggggttaatcaaaaagaaaagattaaagagttaaaaactcaa
gttgatgttctcacattaagtgctactcctattcctcgaaccttatatatgtctttgtca
ggtattcgagaaatgagtttaataactactcctccaccttctcgtcgtcccatcaaaacc
cacttatccagtcataatcctgatgttattaggaccgccattcgtaacgaattagatcgg
ggaggacagatcttctatgttgttcctagagttgaaggaattgaagaagtagctgggaaa
ttgcaacaaatggtttccagtgcgaaaatcatggttgctcatggacaaatgaatgttaac
gaattagaaataaccatgttagaattcaacaatgggatgggagatattttagtttgtaca
acgattattgaatcaggattagacatcccaagagttaatacaattattgttgaagattcc
caaaaatttggtttatctcaactttatcagttgagaggaagggtggggcgatctgggata
caagctcatgcttggttattatatccaagtaaaggagaaataacagaaacggcccggaaa
agattgagggccttacaagaattcagccaactgggctcaggatatcaattggctacccgt
gacatggaaatccggggagtaggaaacctattaggggctgaacagtcaggtcaaatgacg
gctattggatttgaattgtacatggaaatgttacaggaagctattaaagagatccaaggt
caggaaatacctcgagttgatgaaacccaagttgatttacagttaacggcttttattcct
actagttatattgctgacactcaacaaaaaatggatgcttatcgagcagtagcaacggcg
aattctaaagaagatttagagcaaattatggtagcttggacagactgctatggaaagatt
ccctcctcggtaaaacagctactgcaagtaatagaattaaaacaaattggcaaatcttta
gggttttctcgcattaagactgatgggaaacaacatgtcattttagaaactccaatggaa
gaacctgcttggaaattattagaagaaaacttacccaattatctgcaatcgcggttcgtt
tatagtcctaaaaaagtgactgttaggggtttaggactatcaaaaccccaaaaacaatta
gagagtttgattgagtggttaggaaagatgaaaggagctttaccccaaaatgggatagaa
attgctaattga
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