Corynebacterium epidermidicanis: CEPID_04265
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Entry
CEPID_04265 CDS
T03955
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cei
Corynebacterium epidermidicanis
Pathway
cei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEPID_04265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cei03400
]
CEPID_04265 (mfd)
Enzymes [BR:
cei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEPID_04265 (mfd)
DNA repair and recombination proteins [BR:
cei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEPID_04265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
YmdB
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKK02725
UniProt:
A0A0G3GQ94
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All DBs
Position
878957..882562
Genome browser
AA seq
1201 aa
AA seq
DB search
MAQTPMLAGLLKVAASDPKLKGLLENVGTQRLHIEAKHQALPWTVATLAHRAPVLVVVAT
GREAEDLTAELRAILGDAVAWFPSWETLPHERMSPGVDVVGRRAEVLAHLNQLKVVVTAA
RGFAQPVLKQDYQPLQVTAGQDYDFATLTRELVHRAYSHVDMVAKRGQFATRGGIIDVFP
TTADHPVRLEFWGDEVTDIRAFAVADQRAIPDMSYTSVDIFPARALLIDDAVAKRAADLA
VAHPGNPALVELLTKVSEKQPAEGMEALIPALTDADMVALPDVMPAGTHTLLVDPEKIRT
RVADLEATDQEFLAAGWEAAAMGADGPVAVSGLDLTASSYRSFESLLLSSEITWTFAPEG
MLVADAADTLPLDFEAAPAPRGDLKEIDTLMAMLLAHTTAGGRAAFVAPAQGAIKRMVDR
FKEKGIPTKVATAGWQPTAGEVTLYQALSHNGLVFPGAQLVVVTETDLTGNRVGDIAGAK
RRPAKKRNRVDPLALKTGDLVVHETHGIGRFLKMTERTINTGDGTSRREYLVLEYASSRR
GGPADQLYVPMDSLDLLSKYVGGEKPALSKMGGADWKNTKKKARAAVREIAGELVELYAK
RQAAPGHAFAPDSPWQAEMEDNFPFVETEDQMLAIEAVKADMEKPVPMDRVVVGDVGYGK
TEVAVRAAFKAIQDGKQVAVLVPTTLLAQQHLSTFEQRMEGFPVTIRGLSRFTSASESKE
TLAGLLDGTVDIVIGTHRLLQTGVHWKNLGLVIVDEEQRFGVEHKEHIKALRTAVDVLTM
SATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAQEDKQVAAAIRRELLRDGQIFY
VHNKVSSIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETG
LDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGITLTETSYDRLATIA
QNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKV
LDATDKEPREIRVDLPVDAHIPESYINSERLRLEVYRKLASSTSETDLQLAVEEMEDRYG
PIPVEVSRLLAVARLRHIMRAARLTDVAIQGTRIKVHPVELPDSKQVRLRRLYPGSTYRA
AAQAIQLSIPKAGNGMGAPQLRDVELLQWVADFIAGMFDVPAVSVSGGDSSKKDRVISVG
D
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagacccccatgctggcagggctgctaaaagtagcagcttctgacccgaagctg
aaggggctattggaaaacgtcggtacgcagcgcctgcatattgaggccaaacatcaagcg
ttgccgtggactgtcgccacgttggcgcaccgcgctcccgttctcgtggtcgttgctact
gggcgtgaagccgaagacctcactgccgagctgcgtgcgattctcggcgacgccgtcgct
tggtttccgtcctgggagaccctgccgcacgaacggatgagcccgggcgtagatgtcgtc
ggccggcgcgccgaggtgctcgcacaccttaaccaactcaaagttgtagtcaccgcagct
cgcgggttcgcccagccagtgctcaaacaggactaccagccgctccaggtaacggcgggc
caagactacgacttcgcgacactaacccgggaactcgtccaccgcgcgtactcccacgta
gacatggtggcaaagcgcggacaatttgcgacccgtggcggcatcatcgacgtgttccca
accaccgcggaccatccggtgcgactggaattctggggcgatgaagtcacagatattcgt
gccttcgcggtcgccgaccagcgcgcaatcccggacatgagctacacatccgtggacatc
tttccagccagggcgctgcttatcgacgacgccgtcgccaagcgcgcagccgacctggca
gttgcgcatcccgggaatccagccctcgtcgagctgctgacaaaggtgtccgaaaagcaa
ccggcagaaggcatggaagcccttattccggcgcttactgatgcggacatggtggcattg
ccggacgtgatgcccgcgggcacgcacaccttgctcgtggacccggaaaagattcgcacc
agagtcgccgacctggaagcaaccgaccaagaattcctcgcggccggttgggaagccgct
gccatgggagctgatggccccgtcgcagtgagtggccttgacctaacagctagttcctac
cgatcattcgagtccctgctgctctccagcgaaatcacttggacgttcgctccggaaggc
atgctcgtcgctgatgcagcagatacgttgccacttgacttcgaggcggcaccggctccc
cgtggtgatctcaaagagatcgacacgttgatggcgatgttgctcgcgcacactaccgcc
ggtggacgcgcagcgtttgttgctcctgcgcagggtgccatcaagcggatggttgaccgc
ttcaaagagaagggcatccccaccaaggtggctaccgcagggtggcagcctactgctggg
gaagtgactctctaccaggcgctttcacacaacggcttggttttccctggcgcacagctt
gtagttgtcaccgaaactgacctgaccggcaaccgcgtgggcgatattgcgggagcgaag
cgtcgaccagccaagaagcgaaaccgagttgatccgctggcgctgaaaaccggcgatctg
gtggtgcatgagacgcacggtatcggacgattcctgaaaatgaccgagcggaccatcaac
accggtgatggcacgtcgcgtcgggaatacctggtgctggaatacgcgtcttcgcggcgc
ggcggcccggctgaccagctgtatgtccccatggattcccttgacctgctgtcaaagtac
gtaggcggggaaaagccggcgctgtccaagatgggtggtgcggactggaagaacacgaag
aagaaggcccgcgccgcggttcgggaaattgcgggcgagctggttgagctctacgccaaa
cgtcaagccgcgcctggccacgcattcgcgccggactcaccgtggcaggccgagatggaa
gacaactttccgttcgtggaaactgaggaccagatgcttgccatcgaggctgtgaaagcc
gacatggaaaagccggtgccgatggaccgcgtggtggtcggcgacgttggctacggtaaa
accgaggtcgccgtgcgcgcagcatttaaagcgatccaagacggaaaacaggtggcggtg
ctcgtgccgacgaccctgctcgcacagcagcacttgtcaacatttgagcagcgtatggag
ggtttcccggttactatccgtggcctttcccgctttacttcagcctccgagtcgaaggaa
accctagctggactcctcgacggcaccgtcgacatcgtcatcggtacccaccgcctcctc
caaaccggcgtgcactggaagaacctcggactggtcatcgtggacgaagagcagcgcttc
ggcgtggagcacaaggaacacatcaaagccttgcgcaccgccgtcgatgtgctcaccatg
tctgccaccccgatcccgcgcaccctggagatgtcgatggccggcatccgcgaaatgtcg
accattctgaccccgccggaggaccgccaccccgtgctcacctacgtgggcgcacaggaa
gacaagcaggtcgccgcggctattcgacgcgagctgcttcgcgacggccagatcttctat
gtccacaacaaagtttcttcgattgaaaagaaggcccgcgagatccgcgatctggtgccg
gaagcccgcgtcgtcgtggcgcacggccagatgtccgaggaacttctcgaacaaacagtg
cagggtttctgggatcgcgagtatgacgtcctcgtgtgtaccaccatcgtggaaaccggc
ctggacatcgcgaacgcgaacacattgatcgtcgaaaatgcgcaccatatgggcctttcc
cagctgcaccagctgcgtggccgcgtggggcgctcccgcgagcgtggctacgcctacttc
ctctatccgaaggggatcaccctgacggagacgtcgtacgatcgtcttgcgaccatcgcc
caaaataatgacctgggcgctggcatggccgtggcgatgaaagacctcgaaatgcgtggc
gccggcaacgtgctgggcgctgagcagtccggccacatcgcgggcgtcggcttcgatctc
tatgtccgtctcgtcggcgaggccgtggaagcgttccgagcgatggccgacggcaaagtc
ctcgatgccacggataaagagccccgcgaaatccgcgttgacctgcctgtcgacgcccac
atcccggagtcctacatcaactccgagcgcctgcggctcgaggtttaccgcaaattggca
tcttccacttccgagactgacttgcagttggccgttgaagaaatggaagaccgctacggc
ccgatcccggtcgaagtatcccggctgcttgcggttgcccggctgcgccacatcatgcgc
gccgcgcgtcttaccgatgtcgcgatccagggcacccgcatcaaggttcaccccgtcgag
ctgccggattctaagcaggtgcgcctgcgccgtctctacccaggctcgacttaccgcgcg
gcggcccaggcaattcagttgtcgattccgaaggccggcaacggcatgggagcaccgcag
cttcgcgacgtcgagctgctccaatgggtagccgacttcatcgccgggatgtttgatgta
ccggcggtgtcggtgtctggcggagattcatccaagaaggaccgcgtgatttcagtaggg
gactag
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