Caenorhabditis elegans (nematode): CELE_C05C10.2
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Entry
CELE_C05C10.2 CDS
T00019
Symbol
C05C10.2
Name
(RefSeq) DNA2/NAM7 helicase-like C-terminal domain-containing protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
cel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CELE_C05C10.2 (C05C10.2)
03015 mRNA surveillance pathway
CELE_C05C10.2 (C05C10.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_C05C10.2 (C05C10.2)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CELE_C05C10.2 (C05C10.2)
5.6.2.5 RNA 5'-3' helicase
CELE_C05C10.2 (C05C10.2)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CELE_C05C10.2 (C05C10.2)
mRNA cycle factors
Common to processing body (P body) and stress granule
CELE_C05C10.2 (C05C10.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
UvrD_C_2
PhoH
DEAD
Motif
Other DBs
NCBI-GeneID:
174546
NCBI-ProteinID:
NP_001364625
WormBase:
WBGene00007329
Ensembl:
WBGene00007329
LinkDB
All DBs
Position
II:9922219..9930846
Genome browser
AA seq
1525 aa
AA seq
DB search
MLPTSSNNEENRKPENSFPPTHFDTWERLSDYQKPSSSTTDDAYGKPVAKISPTASIDER
ETGIIGSTLRQDSTDSDSTGSSNMNPYDRLDKEVISKKNAHTNSYRNDVDELEGSLRTLG
LQKVNAPTISSFSAWKSQSSALPAPSSSETSKIVKAEIKAPQQPMSLNPNYFDVMREMEK
SMNIFTKLFRGSQIRNKNDLPSGRHLVNYRQNHAFDFAAMSHIWKENKMENLPKLPHRAN
LVMTLPSSRVRNSKICAFYRVLEKKEDKYILVACHVNIHGFHRGDLRFVEVNNRTVLKGF
ERSSVIGHLFLGDILTVTELTRCNETVSNVASSVEDASPDAPCQWMASKVVLFPRHEPVN
VQFKFTCNGMASVVSTNEPMSVILNNLTEAKTNVEYTGIAFKSASYTVHTEDYTKKWYER
IQEEISNIMIYPKALSTIYQYEEYTPNFVVEKQEQEEHPYQQDLEDLDLYRQHEMQTNVF
TKFFDIGKSEKRKFGPGKSISNCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPNMVLPLP
TSMPLDSEICAFYRVLVENKSKYILIACHMNVHGYHRGDLRFLEINESTKLYGFEGRSVI
GQLFLGDIVAVTELARCNGHGSDAFKIPFDVSMSSQNTCTWMASKITLPSRPPPASVLFS
FMKNRMAVVKGCDEPMNVEVKSIQNVEPDLIYKGTAFKPEKPELNFTEGFIKKKRHQIGS
ITLRIASYPNSFGTIYNFQESDIDNEHYKIGINAFSEEKFTEISLDEREKIVETCSLMGF
SAANTIFNGRFDCRAFKMEEIKKNGMTVMFCIENPTSQPTLGLWCAGNRIVIGGPNGDVN
GAIETVIDDPDIGYLRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGYFKTLDP
GCNGRRIIETLYGGKPLERVVVDKRDSSIERMMSQLFGVGSGISEHKTSGKKSEDTPTQF
YFPSTPEPLALNKYQCEYVQMLLDGNPLIIGSSPFGCGKSMTIITAALELYKLKKNRKQL
LITQSNYASVNLIDIAQRVCLSGDDDLKDLKFVRFVSEKNWNELPSNCRTDSDMPYLMNK
LFKDWAMGRIDLTNLTCLKTHHYVQMVSHIIKNDLVNPMLFGDHIAQIYDKLSADFSRAP
HAQTLVEAFFMIYKPDLVMVTADSAKGLLNILRDVCAVQIDEASQLAECTLLGLLKSFNN
ASFGLIGDIHQLPPYCEEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTEL
LSELFYDGALVSGVSELARSDFMTKRDDFWPNPKFPMMFVNNTGASTKMGTSTSNSSEKS
IVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKCGTVDAFQGSEKEII
IMCSTNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRANYWSTIVNKIEQNGNLVN
ANDWYQNQRRNKVSLSSYPLISTSRQSKQQRANEYNSQHKHVKRQSNNDYGSQRSVTNSL
NPEFVGFQKWDDETYGDWPTIQKST
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atgctgccgacaagttcaaataatgaggaaaataggaaaccagaaaactcatttcctccc
actcactttgacacttgggaacgactgagtgattaccaaaaacctagctcaagtacaacg
gatgatgcttatggaaagccagttgcaaagatatccccaacagcatctattgatgaaagg
gaaactggtatcatcggctcaacactgagacaagattcaacggattcagattcaacgggc
tctagcaatatgaacccatatgatagacttgataaagaagtgattagtaaaaagaatgcg
cacacaaattcatatcggaatgacgttgatgaactcgaaggatccctgagaacgttagga
ctacagaaggtcaatgcgccgacaatttcttccttctccgcttggaaatcacaatcttcg
gctcttcctgcccccagctcatctgaaacgagtaaaattgtgaaagcagaaattaaagct
ccacaacagcctatgtcactgaacccgaattatttcgatgtcatgcgagagatggagaag
agtatgaatatattcacaaaactgttcagaggaagccaaattcgcaacaagaatgatcta
ccatcaggacgacatcttgtcaactacaggcaaaatcacgcgttcgactttgcagccatg
tcacatatttggaaagaaaacaagatggagaaccttccaaagttaccacatcgagccaat
cttgtgatgacacttccaagttctcgtgtacgtaactcgaagatttgtgcattctatcga
gtattggagaaaaaggaggacaagtacattttggtggcttgtcatgtgaatatacatgga
tttcatagaggagatcttcgattcgtggaagtcaataatagaactgtgttgaagggattt
gagcgatcaagtgtcattggacacctcttccttggagatattcttacggttactgaactc
accagatgtaatgaaacagtttcgaacgtcgccagttcagttgaggatgcttctccagat
gctccatgtcagtggatggcaagcaaagttgtcctctttcctcgccatgagcccgtaaat
gttcaattcaaattcacctgcaatggtatggcttctgtagtttcgacgaatgagccaatg
agtgttattctgaacaatttgacggaagcaaagactaatgtagaatatacgggaattgca
ttcaagtctgcaagttatacagttcatacggaggattatactaaaaagtggtacgagaga
atccaagaagaaatatcaaacatcatgatatatccaaaagcgctcagtacaatttatcag
tatgaagagtacacaccaaactttgttgttgaaaagcaagagcaagaggaacatccttac
cagcaagacctcgaagaccttgacctatatcgacagcatgagatgcaaacaaacgttttt
acaaagtttttcgatattggaaaaagcgaaaagaggaagtttgggcctggaaaaagtatt
tctaattgtcggcactcggatgctattgatttcgcagccatgtcatatatctggaagaat
attcgtcaacagcatctcccgaaactgccaaagctaccaaacatggtgttaccacttcca
acctctatgccattagactcagaaatttgtgcattttatcgtgttttggtcgagaacaag
tccaagtatatattgattgcctgtcatatgaatgtacatggatatcatcgaggagatctt
cgatttttggaaatcaacgaaagcaccaaattatatggatttgaaggaagaagtgtcatt
ggtcaacttttccttggagatattgttgcggtaactgagcttgcaagatgtaatggtcac
ggatctgatgccttcaagattcctttcgacgtttctatgtcatcacaaaacacatgtacc
tggatggcaagcaaaattactcttccctcaagacctccaccggcatcagttttgttttct
tttatgaaaaatcggatggcagtggtgaaaggatgtgatgagccgatgaatgtggaggtg
aaaagcattcagaacgttgagccggatcttatctacaaaggaactgcgttcaaacctgag
aaacccgaacttaacttcacagaaggtttcattaaaaagaagaggcatcaaattggttca
atcactttgagaattgccagttatccgaattcattcggaacgatttataactttcaagaa
tctgatattgacaatgaacactacaaaattggaatcaatgcattttcggaagagaagttc
acagaaatttctcttgatgagagggaaaaaattgtcgagacttgctcactgatgggattc
agcgctgctaatacgattttcaacggaagattcgattgtcgagcttttaaaatggaagaa
atcaagaaaaatggtatgaccgtaatgttctgcattgaaaatccaaccagtcaaccaaca
cttggcctctggtgtgcgggaaatcgaattgtgatcggaggaccgaatggtgatgtgaat
ggtgctattgaaacagtcattgatgatccggatattggttacttaagaatcgcagctaga
ttatcaagagatatcccgaagaagttcagttttaaaggcgacggagagtttttcgtttca
cagagggaagtatttgagaacgaaattctcgatgatggatacttcaaaacattagatcca
ggatgtaatggaagaagaataatcgagacattgtacggaggaaagccattggaacgagtt
gttgtagacaaacgcgattcttcaattgaacggatgatgagtcagttgtttggtgtaggt
tcgggcatcagtgaacataaaacatcaggaaaaaagtccgaagacaccccaactcaattc
tacttcccaagtactccagaaccattggctctcaacaaatatcaatgtgaatatgttcaa
atgcttcttgatggtaaccctttgatcattggatcttctcccttcggatgtggtaaatca
atgacaattatcactgcggctcttgaattatacaagttgaaaaagaatcgaaagcagcta
ctaataactcagagcaattatgcaagtgttaacttgattgatattgcacaacgggtttgt
ctgagtggagatgatgatttgaaagacttgaagtttgtgcgttttgtgtcggaaaagaat
tggaatgagctaccatcaaactgccgaaccgactctgatatgccgtatcttatgaataaa
ctgttcaaagactgggcaatgggaagaattgatctgacgaatttgacatgtttaaagacc
catcattacgttcaaatggtctcccacattataaaaaatgatctggtcaatccgatgctc
tttggtgatcacatcgcacaaatttacgacaaactctccgcagatttttccagggctccg
catgctcagacgcttgtggaagcatttttcatgatctataagccggacttggtaatggtc
acagcagactctgcaaaaggtttgctgaatattttgcgagatgtctgtgctgttcaaatt
gatgaagcaagtcaactggcagaatgcacacttttgggattgctcaaatcgttcaacaat
gcaagctttggattgatcggagacattcatcaactgccaccatattgtgaagaaggtttg
gaaggaaaactaaaagattttggaattggaaatactatggaacgagctattaaggagaaa
atgtttccggtgtgcacccttcgaaacgtttaccgatgtcatccaaagactactgagctg
ctcagtgagctattttatgatggtgcacttgtttctggagttagtgagcttgcaagaagt
gatttcatgacaaagagagatgatttctggcctaatcccaagtttcccatgatgtttgtg
aacaatacgggtgcatctacaaaaatgggaacatctacgagtaactcatcggagaaatca
attgttggagaaatagtacaaaatcttatcaatgatcctcgcaacccagtcaatccaagt
gacattggagtgatctcattctacagtgctcaaacttcgattctcactgagcatctacgt
ggaagcggtgtcaagtgcggtacggtcgacgcgttccaaggatctgaaaaggagatcatc
atcatgtgcagcacgaacgaacggatctcggactttatgcagctaagtaatcgcttgaac
gttgcaatgtcccgtgcgaagcaggtcacaatcattattggtcatttggatggattgaga
agagccaattattggagcacaattgtgaacaaaattgagcaaaatgggaatttggttaat
gcaaatgactggtatcaaaatcaacgaagaaataaggtatcattgtcatcgtatccacta
atttcaacatcacgacaatcgaaacaacaacgtgccaatgaatataattcacaacacaaa
cacgttaaaagacaaagtaacaatgattacggtagccaacggagcgtgactaactcattg
aatccagaatttgttgggtttcagaaatgggatgacgagacgtatggagattggcccacc
atccagaaatcaacataa
DBGET
integrated database retrieval system
