Caenorhabditis elegans (nematode): CELE_T02H6.2
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Entry
CELE_T02H6.2 CDS
T00019
Symbol
thoc-1
Name
(RefSeq) Death domain-containing protein
KO
K12878
THO complex subunit 1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_T02H6.2 (thoc-1)
09122 Translation
03013 Nucleocytoplasmic transport
CELE_T02H6.2 (thoc-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_T02H6.2 (thoc-1)
03041 Spliceosome [BR:
cel03041
]
CELE_T02H6.2 (thoc-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CELE_T02H6.2 (thoc-1)
Spliceosome [BR:
cel03041
]
Complex C
Other components
EJC/TREX
CELE_T02H6.2 (thoc-1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CELE_T02H6.2 (thoc-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
DUF6779
Motif
Other DBs
NCBI-GeneID:
173460
NCBI-ProteinID:
NP_493796
WormBase:
WBGene00020172
Ensembl:
WBGene00020172
UniProt:
Q9N5E3
LinkDB
All DBs
Position
II:702107..>708608
Genome browser
AA seq
665 aa
AA seq
DB search
METVIENRDLDGLKEVVKAEKKTAKDDEFVLLKVDGFLKKRGFKVAEQPSATKEELARRH
FHFVMNCSKLGLCSKNTPLSTLQDLLEMSSIEECKQIFSIVEENMNEFKQPGFIETAQNN
ILRFCNDLLRRLSRTAETSFCGRIMFFLSRFLPLTEKSGVNFMGHFNTLNVTNYDESETD
GEALLAATSSAPTPTEGAEDMETGEIEEDNSKEIQVTPEMYRQFWSLQKFMSNPNSIYEK
EKFLTFKTDLTAVLTLMTSNKLEKLSSEEEEALENRQKKQQKGSSNDVFFTKYLTSPKLL
ALQLNDSSFRRYFLMQAIIIFQYLTAESRFKPPAKKMVLNEDQAKYVSECEDKCYRLLAD
TMPRGTAFVAGLKRIMLREQEWNTWKNANCADFSEKADKGAMQMYKKRQRIPFNPNSLDL
GTPELTKLWTNEPDVLKACKSDKRKFIPKLPDFIRDPIDEMDPEQQVEEQYKQINDSAFQ
WRAARLLMHKSPGYVTKTDTKTDPTTNIKEFLERNMYNAAKNFNEFKESIENREKKEAEA
RKKVEESLKRKLDSSKVKPSQTSSPNPYTDTILSDEHLTQLARDLSKFKSNLAKCFGTKL
PADDVTSDEKICFKILKSWAEKNGRSGRSLLNTLITDLDVIEVAQASMKVRFFSEKMKNF
SEKSF
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggagacagttatcgaaaatcgggatttggacgggttaaaggaggttgtgaaggcggaa
aaaaagactgcgaaagacgacgaatttgtgcttctaaaagtcgacgggtttctgaaaaag
cggggattcaaggtcgccgagcagccttcagccaccaaggaagagcttgcaaggcggcat
tttcattttgtgatgaattgctccaagcttggtttgtgctccaaaaacactcccctgagc
actctacaggacctcttggagatgagctcaattgaggagtgtaagcagattttcagcata
gtagaagagaatatgaacgagtttaagcagcccggcttcattgaaaccgcccagaacaat
attctacgcttctgcaacgatttgctccgccgcttgagtagaaccgctgaaacatcgttc
tgcggaagaattatgttctttctctcgagattcctcccgctaaccgaaaaatccggtgta
aactttatgggacacttcaacacgcttaacgttaccaactacgacgagtctgaaaccgac
ggtgaagctcttctcgctgccacgtcatcggctccaacacctacggaaggagcagaggat
atggaaactggagaaatcgaagaggataactcaaaagaaatccaagtaactcccgagatg
tatcgccagttttggtcccttcaaaaattcatgtcaaatccgaattcaatatacgaaaag
gagaagtttttgacgtttaaaacggatttgacagcagttctcaccctaatgacgtcgaat
aagctggaaaaactctcctccgaagaggaagaagctctggaaaatcgacagaaaaagcag
caaaaaggatccagtaacgacgtgttttttaccaaatatttgacgtctccaaagcttctc
gccctccaactcaacgattcttcattccgacggtactttttaatgcaggcgatcattatt
tttcaatatttgacagcagaatctcgatttaaacccccggcaaaaaaaatggtgctaaac
gaggatcaagcgaaatatgtgtcagaatgtgaggataaatgctatagattgctggctgat
acgatgccacgtggcactgcattcgttgccgggctcaagcgaattatgctccgcgagcag
gagtggaatacgtggaaaaatgcgaattgtgcagatttttccgaaaaagccgataaagga
gccatgcagatgtacaaaaaacggcaacgcattccattcaacccaaattctctcgatctt
ggaactcctgagctcacaaaactctggacaaatgagcccgatgtgctcaaagcctgtaaa
tcggataagagaaaattcatcccaaaactgccggatttcattcgcgatccgattgacgag
atggatcccgagcagcaagtcgaggagcagtataaacaaatcaacgatagcgcattccaa
tggcgagccgcccgtctcctaatgcacaaatctccgggatacgtgacaaaaaccgacaca
aaaaccgatccgacgactaatatcaaggaatttttggagagaaatatgtataatgcggca
aagaattttaatgaattcaaggaatcgatcgagaatcgtgagaaaaaggaggcagaagct
cggaaaaaagtggaagaatcgctcaaaaggaagctcgattcgtcaaaagtgaagccaagc
caaacatcttctccgaacccctacacagatacaattctctcggatgagcatctcacccag
ttggctcgagatttatcgaaatttaaatcaaatctcgcgaaatgctttggcacaaagctc
cccgccgatgacgtcaccagtgatgagaagatttgctttaaaattctcaaaagttgggct
gaaaagaatgggagaagcgggcggagtctgttgaatacgctaattaccgatttggatgtg
attgaggtggctcaggcgagcatgaaggtacggtttttcagcgaaaaaatgaagaatttc
agcgaaaaatcattttaa
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