Caenorhabditis elegans (nematode): CELE_T16H12.4
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Entry
CELE_T16H12.4 CDS
T00019
Symbol
gtf-2H2C
Name
(RefSeq) General transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03022
Basal transcription factors
cel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CELE_T16H12.4 (gtf-2H2C)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_T16H12.4 (gtf-2H2C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_T16H12.4 (gtf-2H2C)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_T16H12.4 (gtf-2H2C)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CELE_T16H12.4 (gtf-2H2C)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CELE_T16H12.4 (gtf-2H2C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Tfb4
C1_2
DZR
Motif
Other DBs
NCBI-GeneID:
176421
NCBI-ProteinID:
NP_499239
WormBase:
WBGene00011814
Ensembl:
WBGene00011814
UniProt:
P34567
LinkDB
All DBs
Position
III:complement(10088757..10090785)
Genome browser
AA seq
376 aa
AA seq
DB search
MDDDEQKGYTWEAGYAEGLNINDVLVEDEGGSIEKSIAKYVADSKRKARLTKRPERIRLG
IMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADR
LTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVISALST
IDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHT
LPPSSAKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAEC
PVCKLTLVAAPQLARAFRHLQPLSAFEQIEVTRGFCYACETRLSGEGFRCGSCQLVFCLD
CDTLLHESLHVCPGCN
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgatgagcagaagggttacacctgggaagcaggatatgcagaaggcctgaac
atcaatgatgtccttgtggaagatgaaggtggatctatcgaaaaatcaattgccaaatac
gtggctgatagcaaacgaaaagcccgattgacgaagagaccggaacggattcgcctcgga
attatgcgccacgtcatgattgtcatcgattgctcacgattcatgacgagcaaggcaatg
cctccatcgagatttgtagttgttatgaaggctctacaaaccttcctggacagattcttc
gagcaaaatccaattgctcagattggattgatcacttgtaaagatcgtaaagcagatcgg
ttgacaatgatgacaggaaatattcgtgtgctaaaagaatcgctgaacacactaactgaa
gctttctgtggtggcgatttttctcttcaaaacgctcttcaattagcttgtgccaacctg
aaaggaatgccgggtcatgtatcacgagaagttgttctcgttatatcagcactttcaaca
attgatcctggaaatatttacagcactattgagacaatgaagcgaatgaatattcgttgt
tctgctattggactgtctgctgaaatgttcgtttgcaaggaaatggctaaagcaacgaaa
ggagaatattccgtagctcttgaccctgaccatctgcaacttttattctcaaagcataca
ctcccaccgtcctcagcaaaatcgagtgaatgcaacgcaattcatgttggatttccacac
cacgagctgattacaacaagatcgttttgtgtttgtcatcctgacacgaagccaatctca
tctcgtggattcatttgtacacagtgcggagcacgtcactgctcgattccagctgaatgc
ccggtttgcaaacttacacttgtcgcagctccacagcttgctcgagcgtttcgacatctt
cagccgctgtcagcttttgagcaaattgaagtgacacgaggattctgctacgcatgtgaa
actcgtctatctggtgaaggttttcgctgtggtagttgccagcttgtgttttgtctcgat
tgtgatactcttcttcacgagtctctacacgtatgccccggatgcaactga
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integrated database retrieval system
