Cellulomonas shaoxiangyii: E5225_05355
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Entry
E5225_05355 CDS
T05988
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
celz
Cellulomonas shaoxiangyii
Pathway
celz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
celz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E5225_05355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
celz03400
]
E5225_05355
Enzymes [BR:
celz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E5225_05355
DNA repair and recombination proteins [BR:
celz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E5225_05355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
QCB95208
UniProt:
A0A4P7SN22
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All DBs
Position
1171777..1173342
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AA seq
521 aa
AA seq
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MRRFDRTPEPSGASPEPAPEGVRRFVVQRHRARRLHYDVRFEIDGVLVSWAVPRGPTLDP
DVKRMAVHVEDHPLEYEDFEGVIPAGEYGGGDVIVWDRGTWEPYKGDDPAADVARGELHA
ELHGTRLKGRFVLVRRGAADAGGKEQWLLLHKHDEHAVAGWDAEDHPTSVVSGRTNDEVK
ADPDRLWRSDLPAAQASVELHPPVPPGPTDDELAALDDLGRAGTWDVFGRSVRLTNLDKV
LFPSRDGEEPVTKRELVRYAARIAPVALPYLRGRPLNMHRYPEGAATKGFWHKQLPGHAP
DWVPRWDNPEADAGETTTYLVVDEPAALVWAANFGALEWHAWTSLAAEPRRPTYALVDLD
PGTSTPWEDVLLLARLHRDAFAHLGVTAQPKLTGRRGIQIWVPIAVGPDFDETRAWVETL
SRTVGAVVPELVSWRWEVRERGGQARLDYTQNAINKTLVAPYSPRAAAGAPVSAPITWEE
LDEPWLRPDAFTVRTVLDRIAERGDPFRTVLTHDQTLPRLR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggttcgaccgcacgcccgagccgtcgggcgcgtcccccgagccggccccggag
ggcgtgcgccggttcgtggtgcagcggcaccgcgcgcgccgcctgcactacgacgtgcgg
ttcgagatcgacggcgtcctcgtcagctgggccgtgccacgcgggccgacgctcgacccc
gacgtgaagcgcatggcggtgcacgtcgaggaccacccgctcgagtacgaggacttcgag
ggcgtcatcccggcgggcgagtacggcggcggcgacgtcatcgtgtgggaccgcggcacg
tgggagccgtacaagggcgacgacccggcggccgacgtggcgcgcggtgagctgcacgcg
gagctgcacggcacgcggctgaagggcaggttcgtgctggtccggcgcggggcggcggac
gccggcggcaaggagcagtggctgctgctgcacaagcacgacgagcacgcggtggccggc
tgggacgccgaggaccacccgacgtccgtcgtctcgggccggaccaacgacgaggtgaag
gccgacccggaccggctgtggcgctcggacctgccggccgcccaggcgtcggtcgagctg
caccctcccgtgccgcccggtccgaccgacgacgagctcgccgccctcgacgacctgggc
cgcgccggcacgtgggacgtcttcggccgcagcgtgcgcctgacgaacctcgacaaggtg
ctgttcccgagccgggacggcgaggagccggtgaccaagcgcgagctggtccggtacgcg
gcgcgcatcgcccccgtcgccctgccgtacctgcgcggccgcccgctcaacatgcaccgc
tacccggagggtgcggccacgaaggggttctggcacaagcagctgcccggccacgccccg
gactgggtgccgcgctgggacaaccccgaggccgacgcgggggagacgacgacgtacctc
gtggtggacgagcccgcggcgctcgtgtgggcagcgaacttcggcgcgctcgagtggcac
gcgtggacgtcgctcgcggcggagccccgccgcccgacgtacgcgctcgtggacctggac
cccggcacgtcgacgccctgggaggacgtgctgctgctcgcgcgcctgcaccgggacgcg
ttcgcgcacctgggcgtgacggcgcagcccaagctcacgggccggcgcggcatccagatc
tgggtgccgatcgccgtcggccccgacttcgacgagacgcgggcctgggtggagaccctg
tcacgcaccgtcggcgcagtggtgcccgagctcgtgagctggcgctgggaggtgcgcgag
cgcggcggccaggcgcgcctggactacacgcagaacgcgatcaacaagacgctcgtcgcc
ccgtacagcccgcgggccgcggccggggcgccggtgtccgcgccgatcacgtgggaggag
ctcgacgagccgtggctgcgccccgacgcgttcacggtccgcaccgtgctggaccgcatc
gccgagcggggcgacccgttccgcacggtgctgacgcacgaccagaccctcccgcgcctg
cgctga
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