Cyanobacterium endosymbiont of Rhopalodia gibberula: RGRSB_0076
Help
Entry
RGRSB_0076 CDS
T05747
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cer
Cyanobacterium endosymbiont of Rhopalodia gibberula
Pathway
cer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGRSB_0076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cer03400
]
RGRSB_0076
Enzymes [BR:
cer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGRSB_0076
DNA repair and recombination proteins [BR:
cer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RGRSB_0076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBA78710
UniProt:
A0A2Z5TDL8
LinkDB
All DBs
Position
complement(122748..126239)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTFSSLIRTLQKSPLTKELLEKLKKIGHLGLKGIPRLPKGLIVSALAQAENRSLLVVCAT
LEEAGRWAAQLEIMGWKTVDFYPTSEASPYESFNAESEMIWGQMQVLSSINNLLSIDNKL
AIVTTEKVLQPHLPPPDIFWSYCLNLQTGITQSSQEINQLLTKLGYERVSLVENEGQWSR
RGNIVDIFPVSLELPIRLEWFGDKLEKIRELDPSTQRSLEKLDQVFLTPTSFDPIIAHTL
NERHQSLKTYLSIEEIEALEDNNYPEGIGRFLGIAFEKPASLIDYLDDNTICIFDELEQC
ESHSNRWLEYIEDNWQELGSLLPKIHRSFKTSVNLAKKLPIIYLSELSESTDKTALDLSS
RPIPSVPHQFSKLAEILRGKREIYSGISLNKYSTWLVSAQPSRTVSLLEEHDCPAQFIPN
PRDYPGVEKYHTQGVAVALKYSGLAELKGFILPTFRVVVITDKEFFGQHILAPTGYVRKR
HRSASKQINLERLLPGDYVVHKSHGVGRFLKLESLATREYLVIQYYDGLLRIPADSVDSL
SRYCQTENSPPELHKMTGKTWAKTKQRVRKTIRKLAVDLLNLYAKRSKQSGFIYPPDTPW
QEELEGSFPYQPTPDQLKAVQDVKVDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTGG
NKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKDIVQRLATGELDIVV
GTHQILGKTVKFKNLGLLVIDEEQRFGVNQKEKIKELKTQVDVLALSATPIPRTLYMSLS
GIREMSLITTPPPSRRPIKTHLSKYNPDVIRTAIRNELDRGGQIFYVVPRVEGIEEVAEK
LKRMISSARIMVAHGQMNVNELEITMLEFNGGMGDILVCTTIIESGLDIPRVNTIIVEDS
QKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTETARKRLRSLQEFSQLGSGYQLATR
DMEIRGVGNLLGAEQSGQMTAIGFELYMEMLQEAIKEIQGQEIPQVDETQVDLQLTAFIP
TSYIADTQQKMDAYRAVATANSKEDLEQIMIVWTDRYGEIPAPVRQLLQVIELKQIGKSL
GFSRIKTDGKQHIILETPMEEPAWKLLQENLPHYLQSRFVYSPKKVTVRGLGLSKPQKQL
ESLIEWLGKMKGALAREGIEIAN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttctctaattcgtaccctacaaaaatcacctctaactaaagaattatta
gagaaactaaaaaaaataggtcatttgggattgaaaggaattcctcgacttcctaaaggc
ttaatcgtatcagcattagcacaagcggagaatcggagtttattagtggtttgtgcaacc
ctagaagaggcaggaagatgggcagctcaattagagattatgggctggaaaactgttgat
ttttatccaacttcagaagcgtctccttatgagtcatttaacgctgaatcagaaatgatt
tggggacaaatgcaggttttatcaagtataaataatttattgtcaatagacaataaatta
gccatcgttactacagaaaaagttttacaaccccacttaccacctcctgatattttttgg
tcttattgtttaaatttacaaacaggaataactcaatcatctcaagaaattaatcaatta
ttaactaaattaggttatgaaagagtttctttagtagaaaatgagggtcagtggagtaga
agaggaaatattgttgatatttttccagtttccttagaattacctattcgattagaatgg
tttggagataaattagagaaaattcgagaattagatccatcaactcaacgttctttagag
aaacttgatcaagtttttctaactcctacaagttttgatcctatcattgctcacactctt
aatgaacgacatcaatctttaaagacttatttatctatcgaagaaatagaggcattagag
gacaataattatcccgagggaataggacgttttttaggaatagcttttgaaaagcccgct
tcattaatagattatttagacgacaacaccatttgtatttttgatgaattagaacaatgt
gagtcccatagcaatcgctggttagaatatatagaagataactggcaggaattaggatca
cttttaccgaagattcatcgttctttcaaaacctctgtaaatttagccaaaaaacttcct
attatttatctctcagagttatcagaaagcacggataaaactgcgttagatttatcaagt
cgtccgattcctagtgttcctcatcagttttctaaactagcagaaatattacgaggaaaa
cgagagatttacagtggtatttctctgaataaatattcaacttggttggtttctgctcaa
ccttctagaacagtttctttactagaagaacatgactgtccagctcagtttattccaaat
cctcgtgattacccaggagttgaaaagtatcatactcaaggggtagcagtagctttaaag
tattcaggtttagcagaattaaaagggtttattctacctacttttcgggttgtcgttatt
accgataaggagttttttggacagcatattttagctccaacaggatatgttcgaaaacgt
catcgatctgcctctaaacaaataaacttggagcgactacttccaggagattatgttgtt
cataaaagtcatggagttggcagatttctaaagctagaaagcttagcaactcgtgagtat
ttagttattcaatattatgatggtttgttaagaataccagcagattctgtggatagttta
tcccgctactgtcaaaccgaaaatagtcccccagaactacacaaaatgacaggaaaaacc
tgggcaaaaactaaacagagagttcgtaaaacaattagaaaattagcagttgatttattg
aatctctatgctaaacgctctaaacaatcagggtttatctaccctcctgataccccttgg
caagaagaattagagggttcttttccctatcaaccgacacccgatcaactgaaagcagtt
caagatgtaaaagttgatttagaaagtgatcgccctatggatagattagtttgtggagat
gtagggtttggtaaaacagaagttgctgtcagagcaatttttaaagccgttaccggtgga
aataaacaggttgcattgcttgcaccaactacgattttaacgcaacaacattatcatact
cttaaagaaagatttgcaccctatccaattaatattggactactgaatcgtttccgtacc
acttcagagaaaaaggatatcgtacaacggttagccacaggagagttagatatcgttgta
ggaactcatcaaatcttaggaaaaactgttaagttcaaaaacttaggattgttagttatt
gacgaagaacaacgatttggggttaatcaaaaagaaaaaattaaagagttaaaaactcaa
gttgatgttcttgccttaagtgctactcctattcctcgaaccttatatatgtccttgtcg
ggtattcgagaaatgagtttaataactacccctccaccctctcgtcgtcccatcaaaacc
cacttatctaagtataatcccgatgttattagaactgctattcgtaacgaattagatcgg
ggaggacaaatcttctatgttgttcctagagttgaaggaattgaagaagtagcggaaaaa
ttgaaacgaatgatttccagtgcaagaattatggttgctcatggacaaatgaatgttaat
gagttagaaataactatgttagaattcaacggtgggatgggagatattttggtttgtaca
acgattattgaatcaggattggacatcccaagagttaatacgattattgttgaagattcc
caaaaatttggactatctcaactctatcagttgagaggaagagtcggacgatctggaata
caagctcatgcttggttattatatcccagtaaaggagaattaacagaaacggcccgaaaa
agattgaggtccttgcaagaattcagccaactgggctcagggtatcaattagcaactcgt
gacatggaaatccggggagtaggaaacctattaggagctgaacagtcaggtcaaatgacg
gctattggatttgaactgtacatggaaatgttacaagaagcaattaaagagattcaagga
caggaaatacctcaagttgatgaaacccaagttgatttacagttaactgcttttattcct
actagttatattgctgatacccaacaaaaaatggatgcttatcgagcagtagcaacggca
aattctaaagaagatttagagcaaattatgatagtttggacagaccgctatggagaaata
cccgcccctgtgagacaactacttcaggtaatagaattaaaacaaattggcaaatcttta
ggtttttctcgcattaagactgatggcaaacaacatatcattttagagactccaatggaa
gaacctgcttggaaattattacaagaaaacttacctcattatctgcaatcgcggtttgtt
tatagtcctaaaaaagtaactgttaggggcttaggactatcaaaaccccaaaaacaatta
gagagtttgattgagtggttgggaaagatgaaaggagcgttagcccgagagggaatagaa
attgctaattga
DBGET
integrated database retrieval system
