Cellulosilyticum sp. WCF-2: EKH84_08265
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Entry
EKH84_08265 CDS
T06333
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cew
Cellulosilyticum sp. WCF-2
Pathway
cew03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKH84_08265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cew03400
]
EKH84_08265 (mfd)
Enzymes [BR:
cew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKH84_08265 (mfd)
DNA repair and recombination proteins [BR:
cew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKH84_08265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEH68376
UniProt:
A0A5B9YAY6
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All DBs
Position
1881965..1885504
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AA seq
1179 aa
AA seq
DB search
MIKLGYKHKGLIEPLKEVQGMSQLLEHLEYGENVKVVNMIDACKGHFSYGIGCFTEKPLV
IITYDEPSTKQISEDMMALDGKEKVYIYPARDILFYNADVHSMDITSQRIKVIEALQKGE
KAVFIIPIEALLNPLSPKETWESYTKIVQAGECINISRLERELVQMGYERVGRVEGMGQF
AIRGGIIDIYTPIDEEPYRIELWDDEVDSIRNFNVQTQRSIQKVEALRIVPNQEIIFHLD
LLKEAIPAIKEDLKKTTKALRQAGKKESALKIEEQVGEAIDQIQNDISPRGLELYIPYTS
LKLVSILDYLPKETLLIIDEPVKTKARCERVLEEYGMSMKDRLEYGHILPKQIQLIFEYE
HLIVRMETFTKLFLMNFNAEVATFDVAYTLSLKVHENNTLYKNLELLEKDLKEWKKDNKR
VIILSGVKAKSLRLMSELEERGVIASYSENSEEEVKKGQILIYKGVLEKGFYYEDLGLYI
VADKDLFGKDKKTKKSKKKHSGAKIQSFLELAPGDYVVHEQHGIGVFKGVEQIVIEGISR
DNLKIEYADNNVLYVNINQMDMVQKYVGSEGKAPKLSKLGGSEWKKSKAKVKGAIQNIAK
ELVKLYSQRQYSRGFCYEEDTIWQKEFEAMFPYEETGDQLEAIEDVKKDMESDKIMDRLI
CGDVGYGKTEVAIRAAFKAVQNSKQVAYLVPTTILAQQHYQRFAERMADYPITIELLSRF
RTPKQIKKSLEGLASGKVDIIVGTHRLLSKDVQFKDLGLVIIDEEQRFGVTHKEKLKQLR
TQVDVMNLTATPIPRTLHMSLIGIRDMSVLEEAPVERKPVQTYVIEYSEDFIKDAINREL
ARGGQVYFLHNQVKDIEEKAHAIQELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLV
CTTIIETGLDISNANTIIMNHADRMGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVA
EKRLQAIKQFTELGAGFKIAMRDLEIRGAGNLLGAQQHGHMESIGYDLYCKMLAEVVSEE
RGEEVAEEYETTIEIKLNAYIPGSYIPDEIQKLDIYKKIASIKNETDYLDVQEEIEDRYG
NIPVAVYNLLDIALIKAMAHDLYIILVSENNKHVTFKFKENAPLNAEKVPEILKEYGRNL
KFVGGKEPAFKANLEEAGKKELLSNIKNILHLLKKLKSE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaattgggatataaacataaaggacttatagaacctttaaaagaagtgcaggga
atgtcacagcttttagagcatctggagtacggtgaaaatgtcaaggttgtaaacatgata
gatgcctgcaaaggtcatttttcatatggcataggttgcttcactgaaaagccacttgta
attatcacttatgatgagccaagtaccaagcaaatttcagaagatatgatggctttagac
ggtaaagaaaaagtgtatatttatcccgcaagagatatcttgttttataacgcagatgtg
cacagtatggatattacttcccagcgtattaaagtgattgaggccttacaaaaaggagaa
aaggcagtgtttatcattcctattgaggccctacttaatcctttgtcccctaaagaaaca
tgggaatcttatacaaagattgtacaagcgggagaatgcattaacattagccgtttagaa
cgtgaattagtgcaaatgggctatgaacgagttgggcgagtagaaggaatgggacaattt
gccattcgtggcggtattatagacatttatacacctattgatgaagaaccttatagaatt
gaactttgggatgatgaagtcgactctataaggaactttaacgtgcaaacacaacgctct
attcaaaaggtagaggcactacgtattgtgcctaatcaggaaattatttttcatttagac
cttttaaaagaagctattccagcgattaaagaagacctgaaaaagactactaaagcgtta
agacaagccggtaaaaaggaaagcgcacttaagatagaggaacaagtgggagaggcaata
gatcaaattcaaaatgatattagtccccgaggattagagttgtatataccatatacttcg
ctaaaattagtatctattttagattacttacctaaagaaacacttctcattattgatgaa
ccagttaaaacaaaggcaagatgtgaacgggtactagaagaatacggtatgagtatgaaa
gatcgccttgaatacgggcatattttacccaaacaaattcagcttatttttgagtatgag
catttaattgtgcgaatggaaacctttactaaactttttctcatgaactttaatgcagaa
gtggcgacttttgatgttgcttatacgctatccctgaaagtgcatgagaataatacttta
tataaaaatcttgaactcctagagaaggatttaaaggaatggaagaaagataataaaaga
gttattattttatcaggtgttaaagcaaaatccttacgtcttatgagtgagctagaagaa
agaggagtcattgcgagttatagtgaaaatagtgaagaggaagttaagaaggggcaaatt
ctaatttacaagggtgttttagagaaaggtttttattatgaggatttaggcctttatata
gtggctgataaagatttatttggaaaagataagaaaaccaaaaaatccaagaaaaaacac
agtggtgctaaaatacaaagctttttggaacttgcacctggagattatgttgtacatgaa
caacatggtatcggtgtatttaaaggggtcgagcaaattgttattgaaggtattagtaga
gacaatttaaaaatagaatatgcagacaacaatgtattgtacgttaatatcaatcaaatg
gatatggtccaaaagtatgtaggttcagaaggtaaggcgcctaaacttagtaaactaggt
ggatctgagtggaaaaaatctaaagcaaaagtcaaaggagctattcaaaatatagctaaa
gagcttgttaagctttatagccaaagacaatattcaagaggattttgttatgaagaagat
acgatttggcaaaaagaatttgaagctatgtttccttatgaagaaactggtgatcaacta
gaagctattgaagatgttaaaaaagatatggaaagtgacaaaatcatggaccgtcttatt
tgtggagatgtaggatatgggaaaacagaagtggctatccgtgctgcttttaaagcagta
caaaatagcaagcaagtggcatatcttgtaccaactactattttagctcagcaacattat
cagcgttttgcagaacgtatggcagactatcctattaccatagaattgctttcacgtttt
agaacgcctaagcaaattaagaaaagcttagaaggcctagcaagtggaaaagtagatatt
atcgtcgggacccatagattgttatccaaggatgtacagtttaaagacttggggcttgta
atcattgatgaagagcaacgcttcggtgtaactcacaaagaaaaacttaaacagcttcgt
acacaagttgatgtaatgaatttaacagcaacacctattccgagaacccttcacatgagt
ttaatagggattagggatatgagtgttttagaagaagctccggttgaaagaaaacctgta
caaacctatgtgattgagtatagtgaagactttattaaggatgccattaatagagagtta
gctagaggaggacaggtttatttccttcataatcaagtcaaagacatagaagaaaaggca
catgctattcaagagctaattcctaaagcaagagtggcatttgctcatggacaaatgagc
gaacgagaactggagcaaattatgttacgctttatagaaggtgaaattgacgttttagta
tgtactactattattgaaacgggtttggatatttctaatgcgaatacaattattatgaat
catgcagatcgtatggggctgagtcagttgtatcaacttcgtggacgtgttgggcgctca
agtcgtatggggtatgcttatttgatgtatcaaaaagataaggtgctaaaagaagtagct
gagaagcgtcttcaggccattaagcagtttactgaacttggagctggttttaaaattgca
atgagagacttagaaattagaggggcaggcaatttattaggtgctcagcaacatgggcat
atggagtctattggatacgatttgtactgcaaaatgttagcggaagtagtgagtgaagaa
agaggggaagaagtagcggaagaatatgaaacaactatagaaattaagttgaatgcttat
attccaggtagttatattcctgatgaaatacaaaagttggatatttataagaagattgct
tcgattaaaaatgaaacagactatttagatgttcaagaagaaattgaagaccgttatgga
aacatcccagtggctgtatataatttattagacattgcccttatcaaagctatggcacat
gatttatatattattttagtatctgagaacaataaacatgtaacctttaagtttaaagaa
aatgcacctcttaatgctgaaaaagtacctgaaatacttaaagagtatggtagaaatcta
aaattcgtaggaggcaaggaacctgcttttaaagcgaatctagaagaagcagggaaaaaa
gaactacttagtaatattaaaaatatattacatctgctcaaaaaattgaagagtgaatga
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